Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 AP001429.1-201ENST00000602568 530 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 BCRP9-201ENST00000605312 388 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 AC246785.4-201ENST00000605374 287 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 Y_RNA.790-201ENST00000614282 102 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 Y_RNA.782-201ENST00000614695 102 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 DLEU2_6.2-201ENST00000620994 136 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 AC131159.1-201ENST00000621854 213 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 MTND5P33-201ENST00000571250 1450 ntBASIC-1.25□□□□□ -2.61
TFF3Q07654 RNU4-30P-201ENST00000410245 143 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 TMSB4XP1-201ENST00000424567 135 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC-1.26□□□□□ -2.61
TFF3Q07654 AC008628.1-201ENST00000508663 265 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 RNU6-1183P-201ENST00000517054 60 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 RNU6-897P-201ENST00000517135 105 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC-1.26□□□□□ -2.61
TFF3Q07654 AL603758.1-201ENST00000618654 241 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 AL513423.1-201ENST00000621695 132 ntBASIC-1.26□□□□□ -2.61
TFF3Q07654 TPMTP2-201ENST00000414372 726 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 LARP1BP3-201ENST00000437229 869 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 OR6C5P-201ENST00000452388 923 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 AC116562.3-201ENST00000506136 177 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 AC105029.1-201ENST00000520250 669 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 OR8K2P-201ENST00000524645 927 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 AC023050.3-201ENST00000541142 333 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 AC093875.1-201ENST00000623688 504 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 AC017104.5-201ENST00000637647 639 ntBASIC-1.27□□□□□ -2.61
TFF3Q07654 SNORD114-11-201ENST00000363738 75 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 RNU4-16P-201ENST00000364737 141 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 SNORA72.2-201ENST00000365028 127 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 MIR760-201ENST00000390220 80 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 AC133104.1-201ENST00000429100 218 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 RPS15AP10-201ENST00000432472 382 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 AL353752.1-201ENST00000454946 260 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC-1.28□□□□□ -2.61
TFF3Q07654 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC-1.28□□□□□ -2.61
TFF3Q07654 RNU6-917P-201ENST00000516294 104 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 HIGD1AP6-201ENST00000521833 279 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-1.28□□□□□ -2.61
TFF3Q07654 AL929325.1-201ENST00000603096 117 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 AL096861.1-201ENST00000610899 123 ntBASIC-1.28□□□□□ -2.61
TFF3Q07654 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-1.28□□□□□ -2.61
TFF3Q07654 PDCD6IPP1-201ENST00000615124 579 ntTSL 2 BASIC-1.28□□□□□ -2.61
TFF3Q07654 RNA5SP205-201ENST00000364653 136 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 AC083799.1-201ENST00000366451 910 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 MIR520G-201ENST00000385064 90 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 MIR520H-201ENST00000385126 88 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 MIR1207-201ENST00000408249 87 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC-1.29□□□□□ -2.62
TFF3Q07654 RNU6-528P-201ENST00000516926 100 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 MRPS36P4-201ENST00000534436 298 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 FAM96A-206ENST00000559950 561 ntTSL 2 BASIC-1.29□□□□□ -2.62
TFF3Q07654 MTND3P19-201ENST00000603825 345 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 AC121334.2-201ENST00000605387 271 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 U4.2-201ENST00000618561 85 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 U6.107-201ENST00000637108 79 ntBASIC-1.29□□□□□ -2.62
TFF3Q07654 MIR365A-201ENST00000362260 87 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 SNORD114-3-201ENST00000364969 75 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 RNU6-652P-201ENST00000365488 107 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 SNORA3B-201ENST00000391305 131 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 AL596220.1-202ENST00000429768 314 ntTSL 3 BASIC-1.3□□□□□ -2.62
TFF3Q07654 EXOSC3P1-201ENST00000448649 500 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 MED28P2-201ENST00000475771 317 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 AC025459.1-201ENST00000504072 156 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 AC009646.1-201ENST00000510455 318 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 AP003969.1-201ENST00000531846 400 ntTSL 2 BASIC-1.3□□□□□ -2.62
TFF3Q07654 AC013828.2-201ENST00000532487 235 ntBASIC-1.3□□□□□ -2.62
TFF3Q07654 AC068643.2-201ENST00000547418 852 ntTSL 5 BASIC-1.3□□□□□ -2.62
TFF3Q07654 FER-210ENST00000628534 558 ntTSL 5 BASIC-1.3□□□□□ -2.62
TFF3Q07654 RNU6-1216P-201ENST00000362590 107 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 RNU6-199P-201ENST00000362954 107 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 Y_RNA.100-201ENST00000363141 102 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 RNU6-487P-201ENST00000365430 104 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 Y_RNA.452-201ENST00000384202 108 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-1.31□□□□□ -2.62
TFF3Q07654 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC-1.31□□□□□ -2.62
TFF3Q07654 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC-1.31□□□□□ -2.62
TFF3Q07654 RPL17P19-201ENST00000489069 552 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC-1.31□□□□□ -2.62
TFF3Q07654 MIR3115-201ENST00000577915 68 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-1.31□□□□□ -2.62
TFF3Q07654 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC-1.31□□□□□ -2.62
TFF3Q07654 AC234772.3-201ENST00000602277 528 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 AC242628.1-201ENST00000606810 391 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 AL355073.2-201ENST00000612106 557 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 AC068792.1-201ENST00000621354 417 ntBASIC-1.31□□□□□ -2.62
TFF3Q07654 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-1.32□□□□□ -2.62
TFF3Q07654 RNU5E-8P-201ENST00000363502 116 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 SNORA2.2-201ENST00000365473 135 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 Y_RNA.447-201ENST00000384184 113 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 MTCO2P7-201ENST00000446518 666 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 AC107401.1-201ENST00000503426 685 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 AC117525.1-201ENST00000515228 503 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 SNORA31.10-201ENST00000516482 106 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 RNU6-840P-201ENST00000517275 65 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 AL390123.1-201ENST00000603216 237 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 SUMO2P14-201ENST00000604488 293 ntBASIC-1.32□□□□□ -2.62
TFF3Q07654 RNU6-40P-201ENST00000384254 107 ntBASIC-1.33□□□□□ -2.62
TFF3Q07654 RNU6-878P-201ENST00000384578 110 ntBASIC-1.33□□□□□ -2.62
TFF3Q07654 MIR660-201ENST00000385235 97 ntBASIC-1.33□□□□□ -2.62
TFF3Q07654 MIR1285-2-201ENST00000408311 88 ntBASIC-1.33□□□□□ -2.62
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms