Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
RNF4P78317 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.4□□□□□ -1.87
RNF4P78317 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC3.4□□□□□ -1.87
RNF4P78317 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.39□□□□□ -1.87
RNF4P78317 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.39□□□□□ -1.87
RNF4P78317 OLFM3-206ENST00000536598 2801 ntTSL 5 BASIC3.39□□□□□ -1.87
RNF4P78317 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
RNF4P78317 U3.8-201ENST00000363675 217 ntBASIC3.39□□□□□ -1.87
RNF4P78317 RNU4-10P-201ENST00000364383 140 ntBASIC3.39□□□□□ -1.87
RNF4P78317 SNORA73.2-201ENST00000364946 201 ntBASIC3.39□□□□□ -1.87
RNF4P78317 Y_RNA.441-201ENST00000384123 112 ntBASIC3.39□□□□□ -1.87
RNF4P78317 MIR613-201ENST00000385248 95 ntBASIC3.39□□□□□ -1.87
RNF4P78317 RNA5SP354-201ENST00000391247 136 ntBASIC3.39□□□□□ -1.87
RNF4P78317 RNU6-855P-201ENST00000410395 104 ntBASIC3.39□□□□□ -1.87
RNF4P78317 ATP5A1P2-201ENST00000412323 255 ntBASIC3.39□□□□□ -1.87
RNF4P78317 TRIAP1P1-201ENST00000427062 225 ntBASIC3.39□□□□□ -1.87
RNF4P78317 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.39□□□□□ -1.87
RNF4P78317 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC3.39□□□□□ -1.87
RNF4P78317 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC3.39□□□□□ -1.87
RNF4P78317 MIR449C-201ENST00000516047 92 ntBASIC3.39□□□□□ -1.87
RNF4P78317 AC108706.1-201ENST00000611053 297 ntBASIC3.39□□□□□ -1.87
RNF4P78317 AL136164.4-201ENST00000625013 2135 ntBASIC3.39□□□□□ -1.87
RNF4P78317 AC008873.1-201ENST00000625051 138 ntBASIC3.39□□□□□ -1.87
RNF4P78317 U6.115-201ENST00000636045 103 ntBASIC3.39□□□□□ -1.87
RNF4P78317 WDFY3-AS2-202ENST00000451762 5814 ntTSL 3 BASIC3.39□□□□□ -1.87
RNF4P78317 MAPK10-362ENST00000641864 4484 ntBASIC3.38□□□□□ -1.87
RNF4P78317 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RNF4P78317 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
RNF4P78317 AC010329.5-201ENST00000623497 2174 ntBASIC3.38□□□□□ -1.87
RNF4P78317 RNU6-704P-201ENST00000364162 103 ntBASIC3.38□□□□□ -1.87
RNF4P78317 Y_RNA.243-201ENST00000364481 109 ntBASIC3.38□□□□□ -1.87
RNF4P78317 Y_RNA.272-201ENST00000364696 102 ntBASIC3.38□□□□□ -1.87
RNF4P78317 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC3.38□□□□□ -1.87
RNF4P78317 MRPS36P2-201ENST00000512569 299 ntBASIC3.38□□□□□ -1.87
RNF4P78317 SCARNA17.1-201ENST00000516211 143 ntBASIC3.38□□□□□ -1.87
RNF4P78317 SCARNA17.2-201ENST00000516334 143 ntBASIC3.38□□□□□ -1.87
RNF4P78317 RNU6-1098P-201ENST00000516772 96 ntBASIC3.38□□□□□ -1.87
RNF4P78317 AC026403.1-201ENST00000518938 295 ntBASIC3.38□□□□□ -1.87
RNF4P78317 AC136628.3-201ENST00000521868 290 ntBASIC3.38□□□□□ -1.87
RNF4P78317 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC3.38□□□□□ -1.87
RNF4P78317 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.38□□□□□ -1.87
RNF4P78317 SCARNA17.4-201ENST00000614296 143 ntBASIC3.38□□□□□ -1.87
RNF4P78317 AC002064.3-201ENST00000623448 346 ntBASIC3.38□□□□□ -1.87
RNF4P78317 AC244205.2-202ENST00000635781 342 ntBASIC3.38□□□□□ -1.87
RNF4P78317 IL33-202ENST00000417746 2327 ntTSL 2 BASIC3.38□□□□□ -1.87
RNF4P78317 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
RNF4P78317 POSTN-203ENST00000379747 3373 ntAPPRIS P3 TSL 1 (best) BASIC3.38□□□□□ -1.87
RNF4P78317 RNF38-203ENST00000353739 4945 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
RNF4P78317 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.37□□□□□ -1.87
RNF4P78317 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.37□□□□□ -1.87
RNF4P78317 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.37□□□□□ -1.87
RNF4P78317 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RNF4P78317 SNORD32B-201ENST00000364460 84 ntBASIC3.37□□□□□ -1.87
RNF4P78317 SNORA14A-201ENST00000364773 135 ntBASIC3.37□□□□□ -1.87
RNF4P78317 HMGN2P8-201ENST00000391458 268 ntBASIC3.37□□□□□ -1.87
RNF4P78317 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RNF4P78317 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RNF4P78317 YME1L1P1-201ENST00000429435 297 ntBASIC3.37□□□□□ -1.87
RNF4P78317 NDUFB1P1-201ENST00000435191 180 ntBASIC3.37□□□□□ -1.87
RNF4P78317 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.37□□□□□ -1.87
RNF4P78317 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.37□□□□□ -1.87
RNF4P78317 SNORD105B-201ENST00000458770 79 ntBASIC3.37□□□□□ -1.87
RNF4P78317 AC106707.2-201ENST00000484182 374 ntBASIC3.37□□□□□ -1.87
RNF4P78317 AC104619.4-201ENST00000510773 249 ntBASIC3.37□□□□□ -1.87
RNF4P78317 RNU5F-4P-201ENST00000516581 114 ntBASIC3.37□□□□□ -1.87
RNF4P78317 AC009292.2-201ENST00000558889 291 ntTSL 5 BASIC3.37□□□□□ -1.87
RNF4P78317 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.37□□□□□ -1.87
RNF4P78317 AC103810.1-201ENST00000579873 453 ntBASIC3.37□□□□□ -1.87
RNF4P78317 MIR4429-201ENST00000580105 73 ntBASIC3.37□□□□□ -1.87
RNF4P78317 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.37□□□□□ -1.87
RNF4P78317 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.37□□□□□ -1.87
RNF4P78317 AC008739.2-201ENST00000597006 317 ntBASIC3.37□□□□□ -1.87
RNF4P78317 MIR7153-201ENST00000637758 57 ntBASIC3.37□□□□□ -1.87
RNF4P78317 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.37□□□□□ -1.87
RNF4P78317 AL161457.2-203ENST00000590767 2663 ntTSL 5 BASIC3.37□□□□□ -1.87
RNF4P78317 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.37□□□□□ -1.87
RNF4P78317 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.37□□□□□ -1.87
RNF4P78317 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC3.37□□□□□ -1.87
RNF4P78317 AL021368.2-201ENST00000606125 5352 ntBASIC3.36□□□□□ -1.87
RNF4P78317 RTTN-201ENST00000255674 6960 ntTSL 5 BASIC3.36□□□□□ -1.87
RNF4P78317 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.36□□□□□ -1.87
RNF4P78317 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RNF4P78317 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
RNF4P78317 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
RNF4P78317 Y_RNA.287-201ENST00000364853 94 ntBASIC3.36□□□□□ -1.87
RNF4P78317 Y_RNA.293-201ENST00000364908 93 ntBASIC3.36□□□□□ -1.87
RNF4P78317 SNORA72.4-201ENST00000384174 132 ntBASIC3.36□□□□□ -1.87
RNF4P78317 SEPT7P4-201ENST00000437076 306 ntBASIC3.36□□□□□ -1.87
RNF4P78317 Z75741.1-201ENST00000446793 314 ntBASIC3.36□□□□□ -1.87
RNF4P78317 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC3.36□□□□□ -1.87
RNF4P78317 RPS20P10-201ENST00000451209 253 ntBASIC3.36□□□□□ -1.87
RNF4P78317 RPS27AP9-201ENST00000477681 438 ntBASIC3.36□□□□□ -1.87
RNF4P78317 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC3.36□□□□□ -1.87
RNF4P78317 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.36□□□□□ -1.87
RNF4P78317 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC3.36□□□□□ -1.87
RNF4P78317 MIR4474-201ENST00000579189 78 ntBASIC3.36□□□□□ -1.87
RNF4P78317 AL078604.3-201ENST00000615580 211 ntBASIC3.36□□□□□ -1.87
RNF4P78317 AC013791.1-201ENST00000616619 62 ntBASIC3.36□□□□□ -1.87
RNF4P78317 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.36□□□□□ -1.87
RNF4P78317 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.36□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms