Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 SNORA12-201ENST00000391162 147 ntBASIC3.65□□□□□ -1.83
LIG3P49916 BCL2L11-207ENST00000405953 425 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LIG3P49916 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.65□□□□□ -1.83
LIG3P49916 RNA5SP504-201ENST00000410676 117 ntBASIC3.65□□□□□ -1.83
LIG3P49916 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.65□□□□□ -1.83
LIG3P49916 AC009414.1-201ENST00000427200 443 ntBASIC3.65□□□□□ -1.83
LIG3P49916 RPS29P26-201ENST00000477483 171 ntBASIC3.65□□□□□ -1.83
LIG3P49916 AC093663.1-201ENST00000497190 394 ntBASIC3.65□□□□□ -1.83
LIG3P49916 SNORA64.4-201ENST00000516632 81 ntBASIC3.65□□□□□ -1.83
LIG3P49916 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.65□□□□□ -1.83
LIG3P49916 RNA5SP380-201ENST00000517190 98 ntBASIC3.65□□□□□ -1.83
LIG3P49916 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.65□□□□□ -1.83
LIG3P49916 RPL30P11-203ENST00000598995 310 ntBASIC3.65□□□□□ -1.83
LIG3P49916 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIG3P49916 MIR6075-201ENST00000620782 95 ntBASIC3.65□□□□□ -1.83
LIG3P49916 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC3.65□□□□□ -1.83
LIG3P49916 RAPGEF6-202ENST00000308008 4176 ntTSL 1 (best) BASIC3.65□□□□□ -1.83
LIG3P49916 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIG3P49916 WRN-201ENST00000298139 5215 ntAPPRIS P1 TSL 1 (best) BASIC3.65□□□□□ -1.83
LIG3P49916 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.65□□□□□ -1.83
LIG3P49916 KIAA1109-203ENST00000388738 15574 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIG3P49916 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.64□□□□□ -1.83
LIG3P49916 SNORD9-201ENST00000362566 104 ntBASIC3.64□□□□□ -1.83
LIG3P49916 RNU6-1272P-201ENST00000362776 107 ntBASIC3.64□□□□□ -1.83
LIG3P49916 RNU6-211P-201ENST00000384047 107 ntBASIC3.64□□□□□ -1.83
LIG3P49916 U3.40-201ENST00000408706 208 ntBASIC3.64□□□□□ -1.83
LIG3P49916 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.64□□□□□ -1.83
LIG3P49916 RPS29P4-201ENST00000414733 161 ntBASIC3.64□□□□□ -1.83
LIG3P49916 AC004870.4-201ENST00000424359 360 ntTSL 2 BASIC3.64□□□□□ -1.83
LIG3P49916 AC009969.1-201ENST00000438726 172 ntBASIC3.64□□□□□ -1.83
LIG3P49916 HMGN1P18-201ENST00000457642 277 ntBASIC3.64□□□□□ -1.83
LIG3P49916 SNORD105B-201ENST00000458770 79 ntBASIC3.64□□□□□ -1.83
LIG3P49916 MIR2276-201ENST00000516886 89 ntBASIC3.64□□□□□ -1.83
LIG3P49916 RNU6-1212P-201ENST00000517023 104 ntBASIC3.64□□□□□ -1.83
LIG3P49916 AC022559.1-201ENST00000520905 205 ntBASIC3.64□□□□□ -1.83
LIG3P49916 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.64□□□□□ -1.83
LIG3P49916 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.64□□□□□ -1.83
LIG3P49916 AC008739.3-201ENST00000603262 127 ntBASIC3.64□□□□□ -1.83
LIG3P49916 snoU18.1-201ENST00000629629 71 ntBASIC3.64□□□□□ -1.83
LIG3P49916 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.64□□□□□ -1.83
LIG3P49916 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
LIG3P49916 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.64□□□□□ -1.83
LIG3P49916 NBEAL1-203ENST00000449802 10938 ntAPPRIS P1 TSL 5 BASIC3.64□□□□□ -1.83
LIG3P49916 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIG3P49916 NEB-204ENST00000409198 20637 ntAPPRIS P3 TSL 5 BASIC3.63□□□□□ -1.83
LIG3P49916 RNU6-486P-201ENST00000363116 107 ntBASIC3.63□□□□□ -1.83
LIG3P49916 SNORD56.3-201ENST00000363507 71 ntBASIC3.63□□□□□ -1.83
LIG3P49916 Y_RNA.233-201ENST00000364407 101 ntBASIC3.63□□□□□ -1.83
LIG3P49916 RNU6-923P-201ENST00000364753 107 ntBASIC3.63□□□□□ -1.83
LIG3P49916 Y_RNA.304-201ENST00000365011 112 ntBASIC3.63□□□□□ -1.83
LIG3P49916 Y_RNA.308-201ENST00000365043 101 ntBASIC3.63□□□□□ -1.83
LIG3P49916 RNU6-746P-201ENST00000384112 109 ntBASIC3.63□□□□□ -1.83
LIG3P49916 SNORA40.19-201ENST00000390846 128 ntBASIC3.63□□□□□ -1.83
LIG3P49916 RNU6-918P-201ENST00000391219 106 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG3P49916 BTF3P11-201ENST00000426582 477 ntBASIC3.63□□□□□ -1.83
LIG3P49916 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG3P49916 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.63□□□□□ -1.83
LIG3P49916 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG3P49916 Y_RNA.662-201ENST00000516028 97 ntBASIC3.63□□□□□ -1.83
LIG3P49916 RNU6-436P-201ENST00000516171 114 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AC104027.1-201ENST00000521887 300 ntBASIC3.63□□□□□ -1.83
LIG3P49916 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.63□□□□□ -1.83
LIG3P49916 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.63□□□□□ -1.83
LIG3P49916 AC009127.3-201ENST00000570531 403 ntBASIC3.63□□□□□ -1.83
LIG3P49916 MIR3922-201ENST00000585192 84 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.63□□□□□ -1.83
LIG3P49916 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC3.63□□□□□ -1.83
LIG3P49916 UCA1.1-201ENST00000620952 75 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AC008873.1-201ENST00000625051 138 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AC090517.3-201ENST00000625170 141 ntBASIC3.63□□□□□ -1.83
LIG3P49916 AC110079.1-202ENST00000635213 138 ntBASIC3.63□□□□□ -1.83
LIG3P49916 FOXP2-227ENST00000638397 240 ntTSL 5 BASIC3.63□□□□□ -1.83
LIG3P49916 RAD17-206ENST00000358030 2648 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIG3P49916 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.63□□□□□ -1.83
LIG3P49916 NUFIP2-201ENST00000225388 10850 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIG3P49916 AC000403.1-201ENST00000613696 3585 ntBASIC3.62□□□□□ -1.83
LIG3P49916 U3.8-201ENST00000363675 217 ntBASIC3.62□□□□□ -1.83
LIG3P49916 RNA5SP139-201ENST00000364340 117 ntBASIC3.62□□□□□ -1.83
LIG3P49916 Z75741.1-201ENST00000446793 314 ntBASIC3.62□□□□□ -1.83
LIG3P49916 AC140059.1-201ENST00000489238 361 ntBASIC3.62□□□□□ -1.83
LIG3P49916 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.62□□□□□ -1.83
LIG3P49916 AC022149.2-201ENST00000621061 203 ntBASIC3.62□□□□□ -1.83
LIG3P49916 U6.106-201ENST00000636360 105 ntBASIC3.62□□□□□ -1.83
LIG3P49916 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.62□□□□□ -1.83
LIG3P49916 FAM111A-207ENST00000531147 3996 ntAPPRIS P1 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIG3P49916 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC3.62□□□□□ -1.83
LIG3P49916 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.62□□□□□ -1.83
LIG3P49916 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
LIG3P49916 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.61□□□□□ -1.83
LIG3P49916 FAM214A-216ENST00000619572 3548 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIG3P49916 ANKRD36BP1-201ENST00000358576 1779 ntBASIC3.61□□□□□ -1.83
LIG3P49916 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.61□□□□□ -1.83
LIG3P49916 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC3.61□□□□□ -1.83
LIG3P49916 FIGNL1-203ENST00000419119 3700 ntAPPRIS P1 TSL 1 (best) BASIC3.61□□□□□ -1.83
LIG3P49916 RNA5SP119-201ENST00000362715 117 ntBASIC3.61□□□□□ -1.83
LIG3P49916 SNORD32B-201ENST00000364460 84 ntBASIC3.61□□□□□ -1.83
LIG3P49916 SNORA67.2-201ENST00000384300 149 ntBASIC3.61□□□□□ -1.83
LIG3P49916 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.61□□□□□ -1.83
LIG3P49916 AC093578.1-201ENST00000415219 368 ntBASIC3.61□□□□□ -1.83
Retrieved 100 of 98,524 protein–RNA pairs in 105.5 ms