Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 AC107032.1-201ENST00000485945 480 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AC132942.1-201ENST00000486753 483 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 RN7SKP57-201ENST00000517248 293 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AC144568.1-201ENST00000520139 137 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AC090617.3-201ENST00000573670 475 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MIR3117-201ENST00000584034 78 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AC125232.2-201ENST00000592457 143 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.2□□□□□ -2.06
HOXA1P49639 AL670379.2-201ENST00000604983 252 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXA1P49639 AC011476.5-201ENST00000615594 130 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 MIR8057-201ENST00000620957 69 ntBASIC2.2□□□□□ -2.06
HOXA1P49639 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXA1P49639 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.2□□□□□ -2.06
HOXA1P49639 SMARCAD1-206ENST00000509418 2348 ntTSL 2 BASIC2.2□□□□□ -2.06
HOXA1P49639 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.2□□□□□ -2.06
HOXA1P49639 AL596028.1-201ENST00000326971 197 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 RNU6-873P-201ENST00000363833 107 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 RNU6-879P-201ENST00000364328 108 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 RNU4-56P-201ENST00000364700 142 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 RNU6-823P-201ENST00000391042 103 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.19□□□□□ -2.06
HOXA1P49639 AL356057.3-201ENST00000402607 340 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 Y_RNA.597-201ENST00000410463 100 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 RNU6-1001P-201ENST00000411265 100 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AC004866.1-201ENST00000411748 78 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AC027124.2-201ENST00000428249 105 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXA1P49639 AC010469.2-201ENST00000496412 480 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC2.19□□□□□ -2.06
HOXA1P49639 SNORA74D-201ENST00000516404 141 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AC040926.1-201ENST00000530195 238 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 VN1R91P-201ENST00000594377 169 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.19□□□□□ -2.06
HOXA1P49639 AC069528.2-201ENST00000624849 1991 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 ERBIN-202ENST00000380935 6692 ntTSL 5 BASIC2.19□□□□□ -2.06
HOXA1P49639 AC080100.1-201ENST00000624239 5356 ntBASIC2.19□□□□□ -2.06
HOXA1P49639 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-1159P-201ENST00000362933 107 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNA5SP374-201ENST00000362939 125 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-727P-201ENST00000363592 107 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 SNORA18.2-201ENST00000383865 132 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-926P-201ENST00000384075 107 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 Y_RNA.459-201ENST00000384251 102 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-318P-201ENST00000384283 103 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNA5SP213-201ENST00000391031 106 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 snosnR66.1-201ENST00000391095 99 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-985P-201ENST00000410182 104 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 HMGN2P38-201ENST00000423806 265 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 EIF1P2-201ENST00000428233 350 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 MICF-203ENST00000432679 129 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 IPO7P1-201ENST00000442031 636 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.18□□□□□ -2.06
HOXA1P49639 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA1P49639 snoU13.22-201ENST00000459428 104 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 U8.20-201ENST00000459445 131 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-397P-201ENST00000516226 104 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-764P-201ENST00000516396 105 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-965P-201ENST00000516721 96 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 RNU6-567P-201ENST00000516746 107 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 CBX3P7-201ENST00000532876 502 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 GNAI2P1-201ENST00000541815 315 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.18□□□□□ -2.06
HOXA1P49639 AC113195.1-201ENST00000579952 141 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 MIR4325-201ENST00000583049 90 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 MIR4635-201ENST00000583759 79 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC124312.5-201ENST00000604451 268 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC093732.2-201ENST00000607950 274 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC069294.1-201ENST00000608397 350 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 PART1_1.1-201ENST00000611761 217 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC005296.1-201ENST00000616145 209 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 AC137590.2-201ENST00000619709 240 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 MIR3651-201ENST00000630427 90 ntBASIC2.18□□□□□ -2.06
HOXA1P49639 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.18□□□□□ -2.06
HOXA1P49639 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.18□□□□□ -2.06
HOXA1P49639 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA1P49639 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC2.17□□□□□ -2.06
HOXA1P49639 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.17□□□□□ -2.06
HOXA1P49639 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
HOXA1P49639 Y_RNA.153-201ENST00000363615 91 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 Y_RNA.424-201ENST00000384063 103 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 RNU1-52P-201ENST00000384190 164 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 Y_RNA.455-201ENST00000384230 98 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 RNU6-301P-201ENST00000384277 107 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 TRAV34-201ENST00000390461 349 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
HOXA1P49639 RNU6-159P-201ENST00000391080 106 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 SNORA11-201ENST00000408789 128 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 MTCO3P8-201ENST00000453691 755 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.17□□□□□ -2.06
HOXA1P49639 BX510359.1-201ENST00000456973 237 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 AC090255.1-201ENST00000495779 349 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 RNU6-1114P-201ENST00000516022 107 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 Y_RNA.720-201ENST00000517166 92 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 SNORA70.24-201ENST00000517233 118 ntBASIC2.17□□□□□ -2.06
HOXA1P49639 AC093023.1-201ENST00000547375 507 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 80.1 ms