Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC2.23□□□□□ -2.05
MSH2P43246 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.23□□□□□ -2.05
MSH2P43246 SNORD115-32-201ENST00000364079 82 ntBASIC2.23□□□□□ -2.05
MSH2P43246 RNU6-26P-201ENST00000383985 107 ntBASIC2.23□□□□□ -2.05
MSH2P43246 U8.10-201ENST00000384260 133 ntBASIC2.23□□□□□ -2.05
MSH2P43246 SNORA67.4-201ENST00000384688 142 ntBASIC2.23□□□□□ -2.05
MSH2P43246 MIR1262-201ENST00000408276 93 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AC096920.1-201ENST00000423991 241 ntBASIC2.23□□□□□ -2.05
MSH2P43246 USMG5P1-201ENST00000425964 177 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AC245102.2-201ENST00000448956 180 ntBASIC2.23□□□□□ -2.05
MSH2P43246 snoU13.30-201ENST00000458951 104 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AC132942.1-201ENST00000486753 483 ntBASIC2.23□□□□□ -2.05
MSH2P43246 RNA5SP384-201ENST00000516615 116 ntBASIC2.23□□□□□ -2.05
MSH2P43246 RNU6-1213P-201ENST00000517075 94 ntBASIC2.23□□□□□ -2.05
MSH2P43246 APOOP3-201ENST00000536787 586 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC2.23□□□□□ -2.05
MSH2P43246 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.23□□□□□ -2.05
MSH2P43246 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AL162373.1-201ENST00000620433 407 ntBASIC2.23□□□□□ -2.05
MSH2P43246 AC009831.4-201ENST00000620744 325 ntBASIC2.23□□□□□ -2.05
MSH2P43246 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.22□□□□□ -2.05
MSH2P43246 RNU6-1188P-201ENST00000363795 107 ntBASIC2.22□□□□□ -2.05
MSH2P43246 Y_RNA.356-201ENST00000365475 113 ntBASIC2.22□□□□□ -2.05
MSH2P43246 Y_RNA.387-201ENST00000383918 102 ntBASIC2.22□□□□□ -2.05
MSH2P43246 Y_RNA.490-201ENST00000384413 102 ntBASIC2.22□□□□□ -2.05
MSH2P43246 RNU6-331P-201ENST00000384724 107 ntBASIC2.22□□□□□ -2.05
MSH2P43246 MIR32-201ENST00000384965 70 ntBASIC2.22□□□□□ -2.05
MSH2P43246 RNU2-41P-201ENST00000410991 178 ntBASIC2.22□□□□□ -2.05
MSH2P43246 RNA5SP508-201ENST00000411327 119 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AL356379.1-201ENST00000414105 126 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.22□□□□□ -2.05
MSH2P43246 RN7SKP210-201ENST00000459176 261 ntBASIC2.22□□□□□ -2.05
MSH2P43246 RPL30P10-201ENST00000488148 337 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH2P43246 AL590705.4-201ENST00000532209 134 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2.22□□□□□ -2.05
MSH2P43246 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.22□□□□□ -2.05
MSH2P43246 FRG2DP-202ENST00000566967 323 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC090517.1-201ENST00000569307 266 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AL355375.2-201ENST00000574825 175 ntBASIC2.22□□□□□ -2.05
MSH2P43246 MIR5690-201ENST00000583739 73 ntBASIC2.22□□□□□ -2.05
MSH2P43246 MIR4448-201ENST00000584360 86 ntBASIC2.22□□□□□ -2.05
MSH2P43246 7SK.7-201ENST00000603504 247 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC016727.2-201ENST00000603988 621 ntBASIC2.22□□□□□ -2.05
MSH2P43246 AC005014.2-201ENST00000607795 599 ntBASIC2.22□□□□□ -2.05
MSH2P43246 RNU6-234P-201ENST00000365229 104 ntBASIC2.21□□□□□ -2.06
MSH2P43246 Y_RNA.384-201ENST00000383909 102 ntBASIC2.21□□□□□ -2.06
MSH2P43246 SNORD14D-201ENST00000384390 87 ntBASIC2.21□□□□□ -2.06
MSH2P43246 RNU6-1297P-201ENST00000384415 104 ntBASIC2.21□□□□□ -2.06
MSH2P43246 MIR29C-201ENST00000385231 88 ntBASIC2.21□□□□□ -2.06
MSH2P43246 AL512604.1-201ENST00000404812 257 ntBASIC2.21□□□□□ -2.06
MSH2P43246 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH2P43246 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH2P43246 RPL23AP7-203ENST00000449021 469 ntBASIC2.21□□□□□ -2.06
MSH2P43246 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.21□□□□□ -2.06
MSH2P43246 AC007215.1-201ENST00000464893 276 ntBASIC2.21□□□□□ -2.06
MSH2P43246 ANXA2P1-201ENST00000505539 926 ntBASIC2.21□□□□□ -2.06
MSH2P43246 RNU4ATAC7P-201ENST00000516280 125 ntBASIC2.21□□□□□ -2.06
MSH2P43246 SCARNA16.2-201ENST00000516520 172 ntBASIC2.21□□□□□ -2.06
MSH2P43246 RNU1-40P-201ENST00000516816 164 ntBASIC2.21□□□□□ -2.06
MSH2P43246 RNU1-97P-201ENST00000516872 164 ntBASIC2.21□□□□□ -2.06
MSH2P43246 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH2P43246 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.21□□□□□ -2.06
MSH2P43246 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.21□□□□□ -2.06
MSH2P43246 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2.21□□□□□ -2.06
MSH2P43246 MIR5701-3-201ENST00000578890 82 ntBASIC2.21□□□□□ -2.06
MSH2P43246 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC2.21□□□□□ -2.06
MSH2P43246 SNORD53-201ENST00000579969 78 ntBASIC2.21□□□□□ -2.06
MSH2P43246 AC005899.2-201ENST00000584353 90 ntBASIC2.21□□□□□ -2.06
MSH2P43246 MIR5701-1-201ENST00000585138 82 ntBASIC2.21□□□□□ -2.06
MSH2P43246 RMST_6.1-201ENST00000611980 203 ntBASIC2.21□□□□□ -2.06
MSH2P43246 MIR5701-2-201ENST00000615634 82 ntBASIC2.21□□□□□ -2.06
MSH2P43246 SDR42E1P4-201ENST00000620894 481 ntBASIC2.21□□□□□ -2.06
MSH2P43246 AC112487.2-201ENST00000637950 304 ntBASIC2.21□□□□□ -2.06
MSH2P43246 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.21□□□□□ -2.06
MSH2P43246 RNU6-867P-201ENST00000364956 107 ntBASIC2.2□□□□□ -2.06
MSH2P43246 RNU6-310P-201ENST00000384655 107 ntBASIC2.2□□□□□ -2.06
MSH2P43246 MIR487A-201ENST00000385009 80 ntBASIC2.2□□□□□ -2.06
MSH2P43246 MIR221-201ENST00000385135 110 ntBASIC2.2□□□□□ -2.06
MSH2P43246 Y_RNA.646-201ENST00000410980 101 ntBASIC2.2□□□□□ -2.06
MSH2P43246 RNU6-1304P-201ENST00000411374 106 ntBASIC2.2□□□□□ -2.06
MSH2P43246 SRIP3-201ENST00000413200 219 ntBASIC2.2□□□□□ -2.06
MSH2P43246 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH2P43246 AL035666.1-201ENST00000446195 348 ntBASIC2.2□□□□□ -2.06
MSH2P43246 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH2P43246 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH2P43246 RPL23AP94-201ENST00000512518 302 ntBASIC2.2□□□□□ -2.06
MSH2P43246 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.2□□□□□ -2.06
MSH2P43246 RNU7-175P-201ENST00000515915 61 ntBASIC2.2□□□□□ -2.06
MSH2P43246 RNU6-307P-201ENST00000516743 106 ntBASIC2.2□□□□□ -2.06
MSH2P43246 AC104581.2-201ENST00000572227 430 ntBASIC2.2□□□□□ -2.06
MSH2P43246 RPL17P51-201ENST00000605218 238 ntBASIC2.2□□□□□ -2.06
MSH2P43246 AL359314.1-201ENST00000616913 261 ntBASIC2.2□□□□□ -2.06
MSH2P43246 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
MSH2P43246 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
MSH2P43246 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
MSH2P43246 RNA5SP289-201ENST00000362332 137 ntBASIC2.19□□□□□ -2.06
MSH2P43246 RNU5E-4P-201ENST00000364931 120 ntBASIC2.19□□□□□ -2.06
MSH2P43246 Y_RNA.405-201ENST00000383979 100 ntBASIC2.19□□□□□ -2.06
MSH2P43246 Y_RNA.451-201ENST00000384200 100 ntBASIC2.19□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 122.6 ms