Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RNU6-414P-201ENST00000363705 104 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 SNORA63D-201ENST00000364359 132 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RNU6-1138P-201ENST00000365359 106 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RNU6-1292P-201ENST00000383856 107 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 HMGN2P31-201ENST00000432430 273 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC3.72□□□□□ -1.81
COL8A1P27658 NDUFB1P1-201ENST00000435191 180 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 HMGN2P10-201ENST00000448085 265 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 ABCF2P2-201ENST00000450549 296 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AL645939.1-201ENST00000453429 797 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RPS27AP10-201ENST00000496103 208 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RPL23AP94-201ENST00000512518 302 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RNU6-857P-201ENST00000515893 110 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 RNU2-13P-201ENST00000515909 113 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 ACA59.2-201ENST00000517061 156 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AC026403.1-201ENST00000518938 295 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL8A1P27658 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.72□□□□□ -1.81
COL8A1P27658 RNA5SP108-201ENST00000605921 117 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 Pinc.1-201ENST00000616452 154 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
COL8A1P27658 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL8A1P27658 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
COL8A1P27658 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
COL8A1P27658 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC3.72□□□□□ -1.81
COL8A1P27658 AL672296.1-201ENST00000427780 2158 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 AC103988.1-201ENST00000566382 2177 ntBASIC3.72□□□□□ -1.81
COL8A1P27658 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
COL8A1P27658 DDX60L-209ENST00000511577 6781 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.81
COL8A1P27658 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.81
COL8A1P27658 C1orf112-203ENST00000413811 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 AL356292.1-201ENST00000283110 373 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 GPAM-201ENST00000348367 6371 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 RNU6-600P-201ENST00000362524 99 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 Y_RNA.66-201ENST00000362862 102 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 RNU1-83P-201ENST00000363426 164 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 MIR759-201ENST00000390224 91 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 snoU13.4-201ENST00000458916 104 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 SNORD11-201ENST00000459124 84 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC3.71□□□□□ -1.82
COL8A1P27658 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 AC105137.2-201ENST00000569073 466 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 RPL23AP91-201ENST00000569211 455 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 MIR3129-201ENST00000581095 76 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 NPPA-AS1_2.1-201ENST00000618496 149 ntBASIC3.71□□□□□ -1.82
COL8A1P27658 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC3.71□□□□□ -1.82
COL8A1P27658 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 ATP2C1-212ENST00000507488 3579 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
COL8A1P27658 ADGRL3-215ENST00000512091 12636 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
COL8A1P27658 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC3.7□□□□□ -1.82
COL8A1P27658 LARP4-202ENST00000347328 3621 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 RNU4-15P-201ENST00000362613 141 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 RNA5SP175-201ENST00000364275 119 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 RNU6-335P-201ENST00000364563 113 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 RNU6-24P-201ENST00000384440 107 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 MIR30B-201ENST00000384850 88 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 MIR586-201ENST00000385035 97 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 RNU6-1197P-201ENST00000391183 107 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AL117342.1-201ENST00000404861 406 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC3.7□□□□□ -1.82
COL8A1P27658 RNU1-95P-201ENST00000516357 160 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 RNU1-128P-201ENST00000516704 160 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.7□□□□□ -1.82
COL8A1P27658 MIR5195-201ENST00000583555 115 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC3.7□□□□□ -1.82
COL8A1P27658 SNRPGP15-201ENST00000600149 222 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 FAM27D1-201ENST00000612308 341 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AC002064.3-201ENST00000623448 346 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 SCARNA15.3-201ENST00000626315 122 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 PCNP-208ENST00000627393 136 ntTSL 2 BASIC3.7□□□□□ -1.82
COL8A1P27658 SCARNA4.1-201ENST00000628597 123 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.7□□□□□ -1.82
COL8A1P27658 MIR4662A-201ENST00000637499 67 ntBASIC3.7□□□□□ -1.82
COL8A1P27658 ABI3BP-206ENST00000471714 6783 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
COL8A1P27658 AGTR1-202ENST00000402260 2172 ntTSL 5 BASIC3.7□□□□□ -1.82
COL8A1P27658 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC3.7□□□□□ -1.82
COL8A1P27658 TPRG1-201ENST00000345063 5479 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
COL8A1P27658 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL8A1P27658 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC3.69□□□□□ -1.82
COL8A1P27658 SCN1A-210ENST00000635776 10107 ntTSL 5 BASIC3.69□□□□□ -1.82
COL8A1P27658 ASB5-201ENST00000296525 3031 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
COL8A1P27658 N4BP2L2-202ENST00000357505 2917 ntTSL 2 BASIC3.69□□□□□ -1.82
COL8A1P27658 FILIP1L-209ENST00000487087 2321 ntTSL 5 BASIC3.69□□□□□ -1.82
COL8A1P27658 SCEL-205ENST00000535157 3096 ntAPPRIS ALT2 TSL 2 BASIC3.69□□□□□ -1.82
COL8A1P27658 RNU6-1305P-201ENST00000364353 104 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 Y_RNA.290-201ENST00000364879 114 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 RNVU1-14-201ENST00000384770 164 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 SNORD96B-201ENST00000386148 79 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 AL353705.1-201ENST00000433468 480 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 HMGN2P20-201ENST00000437531 273 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 OR9P1P-201ENST00000496431 281 ntBASIC3.69□□□□□ -1.82
COL8A1P27658 RNU7-149P-201ENST00000516739 59 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms