Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 AL593851.1-201ENST00000426171 157 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.91□□□□□ -2.26
USP42Q9H9J4 RNU6-498P-201ENST00000459468 107 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.91□□□□□ -2.26
USP42Q9H9J4 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.91□□□□□ -2.26
USP42Q9H9J4 AP003461.1-201ENST00000528866 78 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC004812.1-201ENST00000540773 146 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC136932.1-201ENST00000574771 208 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 MIR4711-201ENST00000578274 70 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 BX284668.6-201ENST00000606899 438 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC040896.1-201ENST00000613819 479 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 AC011155.2-201ENST00000623202 216 ntBASIC0.91□□□□□ -2.26
USP42Q9H9J4 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.91□□□□□ -2.26
USP42Q9H9J4 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
USP42Q9H9J4 RNU6-428P-201ENST00000362942 107 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNA5SP457-201ENST00000363657 124 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-1141P-201ENST00000364520 107 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU4-28P-201ENST00000364739 141 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-336P-201ENST00000364891 107 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 SNORD31B-201ENST00000364977 69 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 Y_RNA.324-201ENST00000365165 102 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-968P-201ENST00000384076 107 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-550P-201ENST00000391057 101 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 MTCYBP2-201ENST00000407745 171 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-584P-201ENST00000410350 95 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 MTND2P32-201ENST00000521584 1038 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.9□□□□□ -2.26
USP42Q9H9J4 CYP4A27P-201ENST00000567218 190 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 MIR548AB-201ENST00000584917 84 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC245884.10-201ENST00000597355 337 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AL022161.1-201ENST00000604390 213 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC136475.10-201ENST00000620253 385 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 AC068647.2-201ENST00000637380 353 ntBASIC0.9□□□□□ -2.26
USP42Q9H9J4 RNU6-1187P-201ENST00000364771 110 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU6-715P-201ENST00000365204 103 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 Y_RNA.367-201ENST00000365544 101 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 SNORA25-201ENST00000384384 134 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNA5SP201-201ENST00000410316 124 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU6-387P-201ENST00000411331 105 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 HIGD1AP15-201ENST00000416198 280 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC069257.2-201ENST00000441819 155 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AL162395.1-201ENST00000457882 422 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU7-34P-201ENST00000459394 64 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 MTND2P14-201ENST00000482139 351 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 UBL5P1-201ENST00000507979 193 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC067942.3-201ENST00000512025 362 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 MIR4709-201ENST00000577272 72 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC138649.3-201ENST00000622154 254 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC010487.4-201ENST00000637027 61 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 MIR6866-201ENST00000638146 69 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 SNORA63D-201ENST00000364359 132 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 SNORD32A-201ENST00000364805 84 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU6-378P-201ENST00000384324 107 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RNU6-195P-201ENST00000411352 109 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 UBE2D3P4-201ENST00000441973 436 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC013470.1-201ENST00000453438 462 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 MTCO2P6-201ENST00000463134 685 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC010531.2-201ENST00000465012 153 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 RPS23P5-201ENST00000495419 428 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC104136.1-201ENST00000512969 394 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC091544.5-202ENST00000568297 374 ntTSL 3 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 PCGEM1.1-201ENST00000613431 131 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AL133173.2-201ENST00000614270 90 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.89□□□□□ -2.27
USP42Q9H9J4 AC126177.8-201ENST00000618339 1015 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 AL450472.1-202ENST00000637286 180 ntBASIC0.89□□□□□ -2.27
USP42Q9H9J4 MTND5P17-201ENST00000418405 1603 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 RNU5F-7P-201ENST00000363696 115 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 Y_RNA.258-201ENST00000364613 105 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 SNORA4.2-201ENST00000365313 147 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 RNU6-74P-201ENST00000384235 107 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.88□□□□□ -2.27
USP42Q9H9J4 AL133217.1-201ENST00000450980 425 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 SNORD11.1-201ENST00000459482 85 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 AC091435.1-201ENST00000505442 584 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 RNU6-1178P-201ENST00000516674 107 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 RNA5SP330-201ENST00000517096 96 ntBASIC0.88□□□□□ -2.27
USP42Q9H9J4 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
USP42Q9H9J4 CYCSP23-201ENST00000519781 313 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms