Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MIR32-201ENST00000384965 70 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 MIR27B-201ENST00000385129 97 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 SNORA11.2-201ENST00000408318 127 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 MIR548K-201ENST00000408406 116 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 RPS3AP52-201ENST00000435639 297 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 ATP5EP1-201ENST00000510257 156 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 LINC02545-201ENST00000525381 306 ntTSL 3 BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 MIR5006-201ENST00000583027 110 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 TCL6_2.1-201ENST00000615162 119 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 AC005858.4-201ENST00000623191 700 ntBASIC2.53□□□□□ -2
HERPUD2Q9BSE4 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC2.53□□□□□ -2
HERPUD2Q9BSE4 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.53□□□□□ -2.01
HERPUD2Q9BSE4 DNAH7-201ENST00000312428 12394 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-593P-201ENST00000364716 112 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 Y_RNA.332-201ENST00000365271 113 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 Y_RNA.394-201ENST00000383942 103 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 RNA5SP465-201ENST00000391195 109 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AL355497.1-201ENST00000406262 551 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 RPL37P10-201ENST00000412884 288 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC123900.1-201ENST00000420390 96 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 BX510359.4-201ENST00000423750 193 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AL513328.1-201ENST00000446460 224 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 PMCHL2-203ENST00000457791 237 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 SNORD5.1-201ENST00000458800 75 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 snoU13.30-201ENST00000458951 104 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 TOMM22P6-201ENST00000465035 409 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-1198P-201ENST00000516904 67 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AP005660.1-201ENST00000522972 293 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 uc_338.5-201ENST00000611839 155 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 RMST_6.1-201ENST00000611980 203 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC126177.8-201ENST00000618339 1015 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC099654.5-201ENST00000636479 350 ntBASIC2.52□□□□□ -2.01
HERPUD2Q9BSE4 AC245060.5-201ENST00000610778 3293 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNU1-58P-201ENST00000362413 163 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-1059P-201ENST00000363752 98 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-1164P-201ENST00000364428 107 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 SNORD31B-201ENST00000364977 69 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-174P-201ENST00000410406 106 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC009963.1-201ENST00000417265 157 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC004386.2-201ENST00000441858 148 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 MTND3P10-201ENST00000450967 341 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC007215.1-201ENST00000464893 276 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNA5SP148-201ENST00000516527 94 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-1016P-201ENST00000516689 94 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 MIR5696-201ENST00000578474 85 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC022432.1-201ENST00000595739 310 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 U4.3-201ENST00000621047 82 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC023490.3-201ENST00000621762 358 ntTSL 3 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 IGHVIII-44-202ENST00000636235 289 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AC112487.2-201ENST00000637950 304 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.51□□□□□ -2.01
HERPUD2Q9BSE4 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 RNU4-82P-201ENST00000362443 140 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 Y_RNA.132-201ENST00000363421 102 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 SNORA16B-201ENST00000364674 135 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-601P-201ENST00000384540 107 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-541P-201ENST00000384709 110 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 MIR153-2-201ENST00000385225 87 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 Z82188.1-201ENST00000436709 154 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 HMGB1P18-201ENST00000438801 619 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 RNA5SP54-201ENST00000516951 92 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 MIR5694-201ENST00000581190 76 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 UBE2V2P2-201ENST00000587677 504 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AC018462.2-201ENST00000605375 395 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 AC067747.1-201ENST00000608026 250 ntBASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC2.5□□□□□ -2.01
HERPUD2Q9BSE4 MTND4P12-201ENST00000498999 1377 ntBASIC2.49□□□□□ -2.01
HERPUD2Q9BSE4 ZNF299P-201ENST00000406845 1804 ntBASIC2.49□□□□□ -2.01
HERPUD2Q9BSE4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.49□□□□□ -2.01
HERPUD2Q9BSE4 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC2.49□□□□□ -2.01
HERPUD2Q9BSE4 RNU6-23P-201ENST00000363283 107 ntBASIC2.49□□□□□ -2.01
HERPUD2Q9BSE4 Y_RNA.166-201ENST00000363730 102 ntBASIC2.49□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 85.6 ms