Protein–RNA interactions for Protein: Q99536

VAT1, Synaptic vesicle membrane protein VAT-1 homolog, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1Q99536 RNU6-1093P-201ENST00000391194 107 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 AL356776.1-201ENST00000406574 447 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 RNU6ATAC15P-201ENST00000408279 121 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 RPL31P35-201ENST00000431058 377 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.9□□□□□ -2.27
VAT1Q99536 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.9□□□□□ -2.27
VAT1Q99536 SCARNA18-201ENST00000459004 134 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 RPS26P45-201ENST00000471748 340 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 HMGN1P7-201ENST00000491722 313 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 RN7SKP88-201ENST00000516847 250 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.9□□□□□ -2.27
VAT1Q99536 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.9□□□□□ -2.27
VAT1Q99536 MTCO3P23-201ENST00000561363 289 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 MIR4709-201ENST00000577272 72 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 MIR4742-201ENST00000581069 85 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 7SK.8-201ENST00000612110 250 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 AC016597.2-201ENST00000613256 341 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 AC040896.1-201ENST00000613819 479 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 7SK.11-201ENST00000615477 250 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 uc_338.11-201ENST00000619132 160 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 7SK.13-201ENST00000622040 250 ntBASIC0.9□□□□□ -2.27
VAT1Q99536 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.9□□□□□ -2.27
VAT1Q99536 RNU6-562P-201ENST00000362731 107 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 RNU4-48P-201ENST00000365559 182 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 MIR222-201ENST00000384992 110 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 MIR300-201ENST00000401138 83 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AC244505.5-201ENST00000443639 207 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 LINC00709-201ENST00000458168 494 ntTSL 2 BASIC0.89□□□□□ -2.27
VAT1Q99536 AC114982.1-201ENST00000469402 321 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AC079140.5-201ENST00000507882 310 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 SNORD116-28-201ENST00000516123 91 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AC016727.1-205ENST00000605437 569 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AC092354.1-201ENST00000606057 376 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AC006566.1-201ENST00000608943 513 ntBASIC0.89□□□□□ -2.27
VAT1Q99536 AL391516.1-201ENST00000554380 2449 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 SNORA33-201ENST00000363664 130 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 RNU6-968P-201ENST00000384076 107 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 SNORA25-201ENST00000384384 134 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 MIR1283-1-201ENST00000408494 87 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 MTCO2P34-201ENST00000421994 607 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
VAT1Q99536 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC0.88□□□□□ -2.27
VAT1Q99536 AC010486.2-201ENST00000505572 483 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 ARL2BPP4-201ENST00000506854 471 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC0.88□□□□□ -2.27
VAT1Q99536 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.88□□□□□ -2.27
VAT1Q99536 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.88□□□□□ -2.27
VAT1Q99536 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC0.88□□□□□ -2.27
VAT1Q99536 AC245884.10-201ENST00000597355 337 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 AC004492.1-201ENST00000607036 742 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.88□□□□□ -2.27
VAT1Q99536 AC027335.2-201ENST00000624030 375 ntBASIC0.88□□□□□ -2.27
VAT1Q99536 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.88□□□□□ -2.27
VAT1Q99536 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
VAT1Q99536 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.87□□□□□ -2.27
VAT1Q99536 RNU1-124P-201ENST00000363861 145 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 RNU6-534P-201ENST00000364877 106 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 RNA5SP259-201ENST00000365541 109 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 Y_RNA.560-201ENST00000384689 102 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.87□□□□□ -2.27
VAT1Q99536 AC090960.1-201ENST00000421072 306 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.87□□□□□ -2.27
VAT1Q99536 RNU6-1053P-201ENST00000515930 101 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 RNU6-351P-201ENST00000516097 100 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 RNU2-34P-201ENST00000516534 121 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 AC106038.2-201ENST00000520706 568 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC0.87□□□□□ -2.27
VAT1Q99536 AC109446.2-201ENST00000567872 497 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 FAM71BP1-201ENST00000604431 523 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 BX284668.6-201ENST00000606899 438 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 AC068647.2-201ENST00000637380 353 ntBASIC0.87□□□□□ -2.27
VAT1Q99536 SNORD114-2-201ENST00000363953 78 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 Y_RNA.338-201ENST00000365320 114 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 SNORA40.3-201ENST00000390964 122 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 HMGN1P14-201ENST00000412459 517 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.86□□□□□ -2.27
VAT1Q99536 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.86□□□□□ -2.27
VAT1Q99536 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.86□□□□□ -2.27
VAT1Q99536 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.86□□□□□ -2.27
VAT1Q99536 AC016717.1-201ENST00000448918 286 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.86□□□□□ -2.27
VAT1Q99536 snoU13.6-201ENST00000458785 104 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 GMFBP1-201ENST00000467831 427 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 HMGN1P12-201ENST00000499125 195 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 RNU6-113P-201ENST00000516653 101 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AC090616.2-202ENST00000584248 222 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 MIR4753-201ENST00000585119 83 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AC011458.1-201ENST00000604034 617 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AL022345.2-201ENST00000606307 135 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.86□□□□□ -2.27
VAT1Q99536 AP001506.1-201ENST00000615444 211 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AC012676.2-201ENST00000619258 186 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 AL133216.2-202ENST00000634512 349 ntBASIC0.86□□□□□ -2.27
VAT1Q99536 snoU2-30.2-201ENST00000362805 70 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 SNORA72.2-201ENST00000365028 127 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 Y_RNA.399-201ENST00000383955 105 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
VAT1Q99536 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms