Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
VPS39Q96JC1 Y_RNA.89-201ENST00000363031 102 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 RNU6-338P-201ENST00000383888 105 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 RNU6-142P-201ENST00000384019 107 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 MTND3P21-201ENST00000433774 331 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 USP9YP28-201ENST00000435142 589 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AL121890.1-201ENST00000435457 205 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 RNU7-187P-201ENST00000458985 68 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 snoU13.15-201ENST00000459407 104 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 MTCYBP18-201ENST00000501056 747 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC021146.2-201ENST00000504736 556 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC087441.2-201ENST00000529141 262 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 MIR3136-201ENST00000583498 78 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC005786.1-201ENST00000588553 154 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 MIR3976-201ENST00000606807 139 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC090517.2-201ENST00000614966 680 ntBASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.72□□□□□ -2.13
VPS39Q96JC1 Y_RNA.9-201ENST00000362354 101 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 RNU6-534P-201ENST00000364877 106 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 Y_RNA.295-201ENST00000364918 102 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS39Q96JC1 AC078809.1-201ENST00000427601 140 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 HMGB1P18-201ENST00000438801 619 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 HMGN2P18-201ENST00000450680 270 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 YWHAEP4-201ENST00000505390 198 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 RNU6-970P-201ENST00000516312 107 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.71□□□□□ -2.14
VPS39Q96JC1 SCOCP1-201ENST00000554676 349 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC1.71□□□□□ -2.14
VPS39Q96JC1 MIR3672-201ENST00000584290 82 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 MIR3942-201ENST00000585264 109 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 Z98751.3-201ENST00000604447 521 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 MIR8074-201ENST00000615081 81 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 MIR3688-2-201ENST00000636963 87 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 AC100810.6-201ENST00000638068 285 ntBASIC1.71□□□□□ -2.14
VPS39Q96JC1 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
VPS39Q96JC1 RNU6-227P-201ENST00000362865 103 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 Y_RNA.123-201ENST00000363338 102 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 Y_RNA.151-201ENST00000363566 112 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 SNORD113-7-201ENST00000363762 77 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 SNORD114-6-201ENST00000364393 72 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
VPS39Q96JC1 RNU6-26P-201ENST00000383985 107 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 MIR487A-201ENST00000385009 80 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.7□□□□□ -2.14
VPS39Q96JC1 RNA5SP201-201ENST00000410316 124 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 RNU2-41P-201ENST00000410991 178 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 ARL5AP1-201ENST00000418991 388 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 MTCO3P18-201ENST00000440206 761 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 MTND1P11-201ENST00000456661 876 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 snoU13.26-201ENST00000459452 105 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC016632.1-201ENST00000503994 196 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC011352.1-201ENST00000512300 793 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 RNU6-273P-201ENST00000516937 96 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC026371.1-201ENST00000551867 419 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC068790.6-201ENST00000602558 258 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 PCGEM1.1-201ENST00000613431 131 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 AC073869.6-201ENST00000640656 341 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
VPS39Q96JC1 LINC02555-201ENST00000563933 1951 ntBASIC1.7□□□□□ -2.14
VPS39Q96JC1 WWP1P1-201ENST00000466609 2769 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 Y_RNA.332-201ENST00000365271 113 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.69□□□□□ -2.14
VPS39Q96JC1 RNU6-214P-201ENST00000384130 107 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 MIR521-1-201ENST00000384902 87 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 U8.13-201ENST00000390842 128 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 SNORA12.2-201ENST00000391040 156 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 SNORA26.3-201ENST00000391119 136 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 SNORA40.18-201ENST00000391200 128 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 MTCYBP2-201ENST00000407745 171 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 RPS20P15-201ENST00000412792 311 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AL513185.2-201ENST00000425543 193 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 NDUFA5P4-201ENST00000436704 385 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 FTH1P25-201ENST00000447665 469 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 RNU1-131P-201ENST00000458943 161 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 RPS29P25-201ENST00000481709 171 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AC104564.1-201ENST00000493028 407 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS39Q96JC1 ATP5EP1-201ENST00000510257 156 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.69□□□□□ -2.14
VPS39Q96JC1 SUB1P4-201ENST00000566062 339 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 MIR3923-201ENST00000579521 83 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 CPDP1-201ENST00000579660 283 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AP000907.4-201ENST00000604143 237 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 MIR3662-201ENST00000637030 95 ntBASIC1.69□□□□□ -2.14
VPS39Q96JC1 AC068137.4-201ENST00000638485 296 ntBASIC1.69□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 147.8 ms