Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ARF4P1-201ENST00000605447 541 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 AC093732.2-201ENST00000607950 274 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 MIR3658-201ENST00000636291 56 ntBASIC4□□□□□ -1.77
DEPDC4Q8N2C3 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 HNRNPC-203ENST00000430246 4501 ntAPPRIS P2 TSL 1 (best) BASIC4□□□□□ -1.77
DEPDC4Q8N2C3 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 TBC1D31-210ENST00000521676 3256 ntTSL 5 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AC091564.4-201ENST00000533934 2194 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP139-201ENST00000364340 117 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 MIR129-1-201ENST00000384972 72 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 MT-TT-201ENST00000387460 66 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP306-201ENST00000411087 107 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AC112715.1-201ENST00000445534 350 ntTSL 3 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AC016925.1-201ENST00000458303 298 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 SCARNA17.1-201ENST00000516211 143 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 SCARNA17.2-201ENST00000516334 143 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AP001781.1-201ENST00000530977 207 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AC090877.1-201ENST00000561418 344 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AL356218.2-201ENST00000605264 187 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 SCARNA17.4-201ENST00000614296 143 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 UCA1.1-201ENST00000620952 75 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 MIR7702-201ENST00000621931 59 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 AC110079.1-202ENST00000635213 138 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 MBD5-212ENST00000627651 5610 ntTSL 5 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 FAM35DP-201ENST00000323387 2712 ntBASIC3.99□□□□□ -1.77
DEPDC4Q8N2C3 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 LRFN5-204ENST00000554171 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 MCF2-210ENST00000536274 3461 ntAPPRIS ALT2 TSL 2 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNU1-72P-201ENST00000362976 153 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 Y_RNA.81-201ENST00000362997 102 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-944P-201ENST00000364023 107 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP496-201ENST00000391240 109 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 MIR449C-201ENST00000516047 92 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP272-201ENST00000516095 111 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNU2-34P-201ENST00000516534 121 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-586P-201ENST00000517265 104 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 AC026992.1-202ENST00000558454 421 ntTSL 3 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 MIR3160-1-201ENST00000577972 85 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 POLR3GP1-201ENST00000594073 261 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 MAPK10-372ENST00000641954 3413 ntBASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 ZNF439-201ENST00000304030 2622 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 KNTC1-201ENST00000333479 6975 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 TAOK3-202ENST00000419821 4301 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
DEPDC4Q8N2C3 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 ERBIN-203ENST00000380938 4701 ntTSL 2 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 AC021146.4-201ENST00000309229 279 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNA5SP447-201ENST00000363749 119 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-674P-201ENST00000363831 107 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-407P-201ENST00000365280 104 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 SNORD6-201ENST00000365444 73 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-1235P-201ENST00000384559 107 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 SNORD66.1-201ENST00000391230 76 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 SNORA48.7-201ENST00000391302 135 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 AC008134.1-201ENST00000420943 193 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RPL23AP52-201ENST00000439311 478 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RPL23AP93-201ENST00000440847 484 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU7-197P-201ENST00000458836 62 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RNU6-498P-201ENST00000459468 107 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 AC025554.1-201ENST00000505641 188 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 ATP5EP1-201ENST00000510257 156 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RAC1P2-201ENST00000511164 579 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 IGKV1-33-202ENST00000558152 324 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 AC106785.1-201ENST00000565935 262 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 RN7SL703P-201ENST00000578485 302 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 IGKV1D-33-202ENST00000611734 324 ntAPPRIS ALT2 TSL 5 BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 TUG1_4.1-201ENST00000619464 181 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 MIR7157-201ENST00000635801 60 ntBASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 LLPH-201ENST00000266604 7746 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
DEPDC4Q8N2C3 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.77
DEPDC4Q8N2C3 USP26-201ENST00000370832 3642 ntAPPRIS P1 BASIC3.96□□□□□ -1.77
DEPDC4Q8N2C3 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.77
DEPDC4Q8N2C3 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 Y_RNA.127-201ENST00000363386 109 ntBASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 SNORD116-13-201ENST00000384408 92 ntBASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 SNORD37.2-201ENST00000391075 66 ntBASIC3.96□□□□□ -1.78
DEPDC4Q8N2C3 U6atac.2-201ENST00000408644 118 ntBASIC3.96□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms