Protein–RNA interactions for Protein: Q70EK8

USP53, Inactive ubiquitin carboxyl-terminal hydrolase 53, humanhuman

Predictions only

Length 1,073 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP53Q70EK8 RNU6-200P-201ENST00000364743 107 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 Y_RNA.277-201ENST00000364754 102 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 MIR184-201ENST00000384962 84 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.34□□□□□ -1.87
USP53Q70EK8 AC091179.1-201ENST00000461606 579 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 RN7SL594P-201ENST00000470590 287 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 RNA5SP112-201ENST00000515937 99 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 RNU6-344P-201ENST00000516635 111 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 SCARNA11.3-201ENST00000517276 130 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AC093331.1-201ENST00000521474 169 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 DEFB131C-201ENST00000528817 165 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.34□□□□□ -1.87
USP53Q70EK8 AC055872.1-201ENST00000570978 278 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AC103810.1-201ENST00000579873 453 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AC022441.3-201ENST00000605737 136 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 RNVU1-4-201ENST00000612985 164 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AL162274.2-201ENST00000614406 332 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 AL590240.4-201ENST00000616908 390 ntBASIC3.34□□□□□ -1.87
USP53Q70EK8 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.34□□□□□ -1.88
USP53Q70EK8 MFSD8-233ENST00000641482 4860 ntBASIC3.34□□□□□ -1.88
USP53Q70EK8 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.34□□□□□ -1.88
USP53Q70EK8 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.34□□□□□ -1.88
USP53Q70EK8 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.33□□□□□ -1.88
USP53Q70EK8 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC3.33□□□□□ -1.88
USP53Q70EK8 MCMDC2-207ENST00000492775 1831 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP53Q70EK8 RNU6-727P-201ENST00000363592 107 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 RNA5-8SP4-201ENST00000365096 150 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 Y_RNA.498-201ENST00000384460 102 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 Y_RNA.569-201ENST00000384749 103 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 RNU1-101P-201ENST00000391171 127 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 RNU2-14P-201ENST00000411053 191 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC004866.1-201ENST00000411748 78 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 RPL23AP36-201ENST00000413895 458 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC002075.2-201ENST00000425207 252 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC027124.2-201ENST00000428249 105 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.33□□□□□ -1.88
USP53Q70EK8 PHBP14-201ENST00000512887 367 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 RNU4-71P-201ENST00000516258 113 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC022080.3-201ENST00000544433 482 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC008749.1-201ENST00000597650 306 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC037487.3-201ENST00000606668 112 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 AC099778.2-201ENST00000610904 211 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 MIR7112-201ENST00000616126 65 ntBASIC3.33□□□□□ -1.88
USP53Q70EK8 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
USP53Q70EK8 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP53Q70EK8 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP53Q70EK8 RNU1-75P-201ENST00000347264 129 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 MIR410-201ENST00000362222 80 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 Y_RNA.331-201ENST00000365267 102 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 CD24P4-201ENST00000382840 243 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 Y_RNA.446-201ENST00000384178 104 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.32□□□□□ -1.88
USP53Q70EK8 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.32□□□□□ -1.88
USP53Q70EK8 COTL1P1-201ENST00000422309 375 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 ATP6V0E1P4-201ENST00000427294 242 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 AC004386.2-201ENST00000441858 148 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.32□□□□□ -1.88
USP53Q70EK8 RPS29P31-201ENST00000446147 164 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 RAC1P5-201ENST00000512182 576 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 RNU6-138P-201ENST00000515952 107 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 AC026333.2-201ENST00000542164 106 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.32□□□□□ -1.88
USP53Q70EK8 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC3.32□□□□□ -1.88
USP53Q70EK8 LARP7P3-201ENST00000579888 337 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 MIR4325-201ENST00000583049 90 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 RPL30P11-203ENST00000598995 310 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 IGHVIII-44-202ENST00000636235 289 ntBASIC3.32□□□□□ -1.88
USP53Q70EK8 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP53Q70EK8 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
USP53Q70EK8 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.32□□□□□ -1.88
USP53Q70EK8 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
USP53Q70EK8 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.31□□□□□ -1.88
USP53Q70EK8 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.31□□□□□ -1.88
USP53Q70EK8 Y_RNA.44-201ENST00000362676 108 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 Y_RNA.65-201ENST00000362846 100 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 RNU6-486P-201ENST00000363116 107 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 Y_RNA.136-201ENST00000363444 102 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 SNORA72.2-201ENST00000365028 127 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 SNORA18.2-201ENST00000383865 132 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 AC009237.7-201ENST00000447357 229 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 AC005042.3-201ENST00000453230 174 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 APOA2-205ENST00000468465 421 ntTSL 2 BASIC3.31□□□□□ -1.88
USP53Q70EK8 RPL31P41-201ENST00000477967 372 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC3.31□□□□□ -1.88
USP53Q70EK8 FCF1P8-201ENST00000510322 597 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 MIR4643-201ENST00000577473 78 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 MIR5680-201ENST00000577577 84 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.31□□□□□ -1.88
USP53Q70EK8 MIR3124-201ENST00000582636 67 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 SNORD11B-201ENST00000607707 90 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 AC006001.4-201ENST00000622243 395 ntBASIC3.31□□□□□ -1.88
USP53Q70EK8 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
USP53Q70EK8 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP53Q70EK8 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.31□□□□□ -1.88
USP53Q70EK8 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.3□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 177.4 ms