Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 AC007215.1-201ENST00000464893 276 ntBASIC3.14□□□□□ -1.91
MSX2P35548 RPL30P12-201ENST00000474666 353 ntBASIC3.14□□□□□ -1.91
MSX2P35548 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC3.14□□□□□ -1.91
MSX2P35548 HMGN2P15-201ENST00000585707 270 ntBASIC3.14□□□□□ -1.91
MSX2P35548 AL133393.1-201ENST00000603277 287 ntBASIC3.14□□□□□ -1.91
MSX2P35548 AC039056.2-201ENST00000622261 511 ntBASIC3.14□□□□□ -1.91
MSX2P35548 MFSD8-233ENST00000641482 4860 ntBASIC3.13□□□□□ -1.91
MSX2P35548 GMFB-208ENST00000554908 6721 ntTSL 1 (best) BASIC3.13□□□□□ -1.91
MSX2P35548 AC103988.1-201ENST00000566382 2177 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.13□□□□□ -1.91
MSX2P35548 Y_RNA.240-201ENST00000364469 95 ntBASIC3.13□□□□□ -1.91
MSX2P35548 MIR548I2-201ENST00000408348 149 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC009969.1-201ENST00000438726 172 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.13□□□□□ -1.91
MSX2P35548 AL133547.1-201ENST00000448546 220 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC005042.3-201ENST00000453230 174 ntBASIC3.13□□□□□ -1.91
MSX2P35548 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.13□□□□□ -1.91
MSX2P35548 RNU5F-8P-201ENST00000515941 111 ntBASIC3.13□□□□□ -1.91
MSX2P35548 RNU6-1278P-201ENST00000516130 107 ntBASIC3.13□□□□□ -1.91
MSX2P35548 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSX2P35548 AC012254.1-201ENST00000592747 200 ntTSL 3 BASIC3.13□□□□□ -1.91
MSX2P35548 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC3.13□□□□□ -1.91
MSX2P35548 MZT1P2-201ENST00000604387 248 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC3.13□□□□□ -1.91
MSX2P35548 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC3.13□□□□□ -1.91
MSX2P35548 uc_338.1-201ENST00000612113 180 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC073349.3-201ENST00000617616 186 ntBASIC3.13□□□□□ -1.91
MSX2P35548 AC132825.6-201ENST00000638861 357 ntBASIC3.13□□□□□ -1.91
MSX2P35548 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
MSX2P35548 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.13□□□□□ -1.91
MSX2P35548 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 Y_RNA.101-201ENST00000363154 102 ntBASIC3.12□□□□□ -1.91
MSX2P35548 RNY1P5-201ENST00000383890 115 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC3.12□□□□□ -1.91
MSX2P35548 AC019205.3-201ENST00000424573 156 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AP001324.2-201ENST00000461163 319 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AC090525.1-201ENST00000479116 478 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AC025518.1-201ENST00000479856 347 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC3.12□□□□□ -1.91
MSX2P35548 AC074133.1-201ENST00000515696 183 ntBASIC3.12□□□□□ -1.91
MSX2P35548 Y_RNA.662-201ENST00000516028 97 ntBASIC3.12□□□□□ -1.91
MSX2P35548 RNY3P16-201ENST00000516338 101 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.12□□□□□ -1.91
MSX2P35548 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.12□□□□□ -1.91
MSX2P35548 MIR4308-201ENST00000580634 81 ntBASIC3.12□□□□□ -1.91
MSX2P35548 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC3.12□□□□□ -1.91
MSX2P35548 AC012442.3-202ENST00000636742 206 ntBASIC3.12□□□□□ -1.91
MSX2P35548 MTND5P35-201ENST00000557537 1720 ntBASIC3.12□□□□□ -1.91
MSX2P35548 FNDC3A-202ENST00000398316 5714 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC3.12□□□□□ -1.91
MSX2P35548 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
MSX2P35548 ZNF204P-201ENST00000416749 2397 ntBASIC3.11□□□□□ -1.91
MSX2P35548 BX322639.1-202ENST00000423987 2213 ntBASIC3.11□□□□□ -1.91
MSX2P35548 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.11□□□□□ -1.91
MSX2P35548 CASP1-201ENST00000353247 423 ntTSL 1 (best) BASIC3.11□□□□□ -1.91
MSX2P35548 RNU6-923P-201ENST00000364753 107 ntBASIC3.11□□□□□ -1.91
MSX2P35548 Y_RNA.435-201ENST00000384095 112 ntBASIC3.11□□□□□ -1.91
MSX2P35548 MIR549A-201ENST00000385268 96 ntBASIC3.11□□□□□ -1.91
MSX2P35548 RNU6ATAC40P-201ENST00000408580 137 ntBASIC3.11□□□□□ -1.91
MSX2P35548 ATP5A1P2-201ENST00000412323 255 ntBASIC3.11□□□□□ -1.91
MSX2P35548 ELOCP21-201ENST00000412558 336 ntBASIC3.11□□□□□ -1.91
MSX2P35548 RPL32P35-201ENST00000415214 394 ntBASIC3.11□□□□□ -1.91
MSX2P35548 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.11□□□□□ -1.91
MSX2P35548 RNU6-625P-201ENST00000459412 107 ntBASIC3.11□□□□□ -1.91
MSX2P35548 AC091179.1-201ENST00000461606 579 ntBASIC3.11□□□□□ -1.91
MSX2P35548 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC3.11□□□□□ -1.91
MSX2P35548 MRPS18CP4-201ENST00000535821 231 ntBASIC3.11□□□□□ -1.91
MSX2P35548 AC084365.1-201ENST00000552470 310 ntTSL 3 BASIC3.11□□□□□ -1.91
MSX2P35548 AC018448.1-201ENST00000552843 316 ntBASIC3.11□□□□□ -1.91
MSX2P35548 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.11□□□□□ -1.91
MSX2P35548 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC3.11□□□□□ -1.91
MSX2P35548 AC069200.1-201ENST00000609511 323 ntBASIC3.11□□□□□ -1.91
MSX2P35548 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.11□□□□□ -1.91
MSX2P35548 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.11□□□□□ -1.91
MSX2P35548 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.1□□□□□ -1.91
MSX2P35548 AGL-206ENST00000370165 7106 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSX2P35548 P2RY13-201ENST00000325602 2764 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
MSX2P35548 Y_RNA.179-201ENST00000363844 90 ntBASIC3.1□□□□□ -1.91
MSX2P35548 RNU6-1027P-201ENST00000383998 107 ntBASIC3.1□□□□□ -1.91
MSX2P35548 MIR7-3-201ENST00000384898 110 ntBASIC3.1□□□□□ -1.91
MSX2P35548 MIR449B-201ENST00000384995 97 ntBASIC3.1□□□□□ -1.91
MSX2P35548 Y_RNA.597-201ENST00000410463 100 ntBASIC3.1□□□□□ -1.91
MSX2P35548 RNU6-394P-201ENST00000410735 107 ntBASIC3.1□□□□□ -1.91
MSX2P35548 RNU6-1199P-201ENST00000411249 104 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC023141.4-201ENST00000412031 328 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AL035423.1-201ENST00000420331 213 ntBASIC3.1□□□□□ -1.91
MSX2P35548 RAB28P5-201ENST00000427490 651 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AL161651.1-201ENST00000440882 223 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC3.1□□□□□ -1.91
MSX2P35548 TMSB4XP3-201ENST00000445144 114 ntBASIC3.1□□□□□ -1.91
MSX2P35548 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.1□□□□□ -1.91
MSX2P35548 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC3.1□□□□□ -1.91
MSX2P35548 AC091021.1-201ENST00000468051 388 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC091179.3-201ENST00000474761 144 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC092185.1-201ENST00000491371 97 ntBASIC3.1□□□□□ -1.91
MSX2P35548 RNU7-200P-201ENST00000516105 62 ntBASIC3.1□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 129.4 ms