Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.04□□□□□ -2.4
SDC4P31431 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.04□□□□□ -2.4
SDC4P31431 AC016717.1-201ENST00000448918 286 ntBASIC0.04□□□□□ -2.4
SDC4P31431 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.04□□□□□ -2.4
SDC4P31431 RNU6-917P-201ENST00000516294 104 ntBASIC0.04□□□□□ -2.4
SDC4P31431 RNU6-1069P-201ENST00000516612 133 ntBASIC0.04□□□□□ -2.4
SDC4P31431 MTATP6P2-201ENST00000603319 678 ntBASIC0.04□□□□□ -2.4
SDC4P31431 AL356157.2-201ENST00000605122 111 ntBASIC0.04□□□□□ -2.4
SDC4P31431 AL031775.1-201ENST00000607014 887 ntBASIC0.04□□□□□ -2.4
SDC4P31431 AC097478.2-201ENST00000610572 514 ntBASIC0.04□□□□□ -2.4
SDC4P31431 MIR6718-201ENST00000616153 80 ntBASIC0.04□□□□□ -2.4
SDC4P31431 snoU2-30.2-201ENST00000362805 70 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU6-105P-201ENST00000363909 104 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU6-621P-201ENST00000364752 109 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU4-45P-201ENST00000365469 141 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU4-48P-201ENST00000365559 182 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU6-45P-201ENST00000384471 107 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RN7SKP200-201ENST00000410564 320 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RNU6-1245P-201ENST00000411130 106 ntBASIC0.03□□□□□ -2.4
SDC4P31431 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC010975.2-201ENST00000427781 588 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC244670.1-201ENST00000436879 112 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.03□□□□□ -2.4
SDC4P31431 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC0.03□□□□□ -2.4
SDC4P31431 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC0.03□□□□□ -2.4
SDC4P31431 NAF1-205ENST00000509434 385 ntTSL 3 BASIC0.03□□□□□ -2.4
SDC4P31431 AP002001.1-203ENST00000534002 267 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.03□□□□□ -2.4
SDC4P31431 AC090049.2-201ENST00000550377 109 ntBASIC0.03□□□□□ -2.4
SDC4P31431 MTND1P15-201ENST00000579262 949 ntBASIC0.03□□□□□ -2.4
SDC4P31431 MIR3923-201ENST00000579521 83 ntBASIC0.03□□□□□ -2.4
SDC4P31431 MIR4431-201ENST00000579990 94 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC011712.1-201ENST00000588959 234 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC078795.3-201ENST00000602913 472 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC005776.1-201ENST00000603164 290 ntBASIC0.03□□□□□ -2.4
SDC4P31431 RAC1P9-201ENST00000604990 392 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AC131235.4-201ENST00000609288 620 ntBASIC0.03□□□□□ -2.4
SDC4P31431 AP000484.1-201ENST00000620067 1252 ntBASIC0.03□□□□□ -2.4
SDC4P31431 U6.108-201ENST00000637764 58 ntBASIC0.03□□□□□ -2.4
SDC4P31431 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC0.03□□□□□ -2.4
SDC4P31431 RNU6-1141P-201ENST00000364520 107 ntBASIC0.02□□□□□ -2.41
SDC4P31431 RNU6-769P-201ENST00000384407 104 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AC006366.1-201ENST00000422002 759 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC0.02□□□□□ -2.41
SDC4P31431 USP9YP28-201ENST00000435142 589 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AL162725.1-201ENST00000435405 301 ntBASIC0.02□□□□□ -2.41
SDC4P31431 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.02□□□□□ -2.41
SDC4P31431 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.02□□□□□ -2.41
SDC4P31431 RNU6-123P-201ENST00000516163 102 ntBASIC0.02□□□□□ -2.41
SDC4P31431 RNU6-1110P-201ENST00000516462 101 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AC026616.1-201ENST00000523157 525 ntBASIC0.02□□□□□ -2.41
SDC4P31431 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.02□□□□□ -2.41
SDC4P31431 MIR544B-201ENST00000582372 78 ntBASIC0.02□□□□□ -2.41
SDC4P31431 MIR8054-201ENST00000620877 86 ntBASIC0.02□□□□□ -2.41
SDC4P31431 U4.7-201ENST00000638126 106 ntBASIC0.02□□□□□ -2.41
SDC4P31431 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.01□□□□□ -2.41
SDC4P31431 SNORD44.1-201ENST00000363202 61 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RNU6-371P-201ENST00000364283 108 ntBASIC0.01□□□□□ -2.41
SDC4P31431 Y_RNA.476-201ENST00000384347 108 ntBASIC0.01□□□□□ -2.41
SDC4P31431 MIR193B-201ENST00000384907 83 ntBASIC0.01□□□□□ -2.41
SDC4P31431 Y_RNA.578-201ENST00000390903 88 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AL451046.2-201ENST00000403074 277 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RNU6-293P-201ENST00000411259 106 ntBASIC0.01□□□□□ -2.41
SDC4P31431 MRPS18CP6-201ENST00000423587 223 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RPL23AP50-201ENST00000434149 455 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.01□□□□□ -2.41
SDC4P31431 RPS25P9-201ENST00000435591 252 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC005002.2-201ENST00000438228 269 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RPS23P5-201ENST00000495419 428 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC092436.3-201ENST00000511788 257 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC112206.4-201ENST00000515142 405 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RNU6-1146P-201ENST00000516282 102 ntBASIC0.01□□□□□ -2.41
SDC4P31431 SNORA62.5-201ENST00000516634 120 ntBASIC0.01□□□□□ -2.41
SDC4P31431 DEFB131C-201ENST00000528817 165 ntBASIC0.01□□□□□ -2.41
SDC4P31431 EIF4A1P12-201ENST00000551910 141 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC090517.1-201ENST00000569307 266 ntBASIC0.01□□□□□ -2.41
SDC4P31431 MTND3P13-201ENST00000574391 343 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC131055.1-201ENST00000584626 316 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.01□□□□□ -2.41
SDC4P31431 AL096861.1-201ENST00000610899 123 ntBASIC0.01□□□□□ -2.41
SDC4P31431 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.01□□□□□ -2.41
SDC4P31431 AC006927.2-201ENST00000639256 389 ntBASIC0.01□□□□□ -2.41
SDC4P31431 RNU6-222P-201ENST00000362438 107 ntBASIC0□□□□□ -2.41
SDC4P31431 RNA5SP264-201ENST00000363115 107 ntBASIC0□□□□□ -2.41
SDC4P31431 Y_RNA.330-201ENST00000365230 109 ntBASIC0□□□□□ -2.41
SDC4P31431 EEF1A1P40-201ENST00000412883 573 ntBASIC0□□□□□ -2.41
SDC4P31431 AC114491.1-201ENST00000416095 246 ntBASIC0□□□□□ -2.41
SDC4P31431 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0□□□□□ -2.41
SDC4P31431 ZNF736P9Y-201ENST00000439586 1345 ntBASIC0□□□□□ -2.41
SDC4P31431 AC245047.8-201ENST00000456455 284 ntBASIC0□□□□□ -2.41
SDC4P31431 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0□□□□□ -2.41
SDC4P31431 CYCTP-201ENST00000504253 315 ntBASIC0□□□□□ -2.41
SDC4P31431 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0□□□□□ -2.41
SDC4P31431 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC0□□□□□ -2.41
SDC4P31431 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC0□□□□□ -2.41
SDC4P31431 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0□□□□□ -2.41
SDC4P31431 LARP7P1-201ENST00000605576 316 ntBASIC0□□□□□ -2.41
SDC4P31431 AC100812.1-201ENST00000607622 580 ntBASIC0□□□□□ -2.41
SDC4P31431 AC104458.1-201ENST00000608243 463 ntBASIC0□□□□□ -2.41
Retrieved 100 of 98,524 protein–RNA pairs in 119.3 ms