Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC1.15□□□□□ -2.23
NPHP4O75161 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.15□□□□□ -2.23
NPHP4O75161 CARD18-202ENST00000530950 652 ntAPPRIS P1 TSL 5 BASIC1.15□□□□□ -2.23
NPHP4O75161 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.15□□□□□ -2.23
NPHP4O75161 AC122133.1-201ENST00000613964 233 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 AC079248.2-201ENST00000623779 326 ntBASIC1.15□□□□□ -2.23
NPHP4O75161 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
NPHP4O75161 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC1.14□□□□□ -2.23
NPHP4O75161 Y_RNA.67-201ENST00000362870 100 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 U3.4-201ENST00000363352 213 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 RNU6-393P-201ENST00000384475 107 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 RNU6-939P-201ENST00000384634 107 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 SNORA16.2-201ENST00000390991 127 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 MTCYBP2-201ENST00000407745 171 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.14□□□□□ -2.23
NPHP4O75161 AC003659.1-201ENST00000424251 465 ntTSL 5 BASIC1.14□□□□□ -2.23
NPHP4O75161 AC099677.2-201ENST00000436385 175 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 RPS27AP8-201ENST00000452665 445 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 AL033528.1-201ENST00000453780 140 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 RNU1-131P-201ENST00000458943 161 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 snoU13.30-201ENST00000458951 104 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 RNU7-14P-201ENST00000459331 62 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 AC025465.3-201ENST00000510570 311 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 SNORD27.1-201ENST00000516319 72 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 AC060788.1-201ENST00000521318 469 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 SNORA77B-201ENST00000578179 125 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 MIR3915-201ENST00000578518 97 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 MIR3682-201ENST00000581338 84 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 MIR3136-201ENST00000583498 78 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 BNIP3P16-201ENST00000589779 534 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC1.14□□□□□ -2.23
NPHP4O75161 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.14□□□□□ -2.23
NPHP4O75161 MIR8063-201ENST00000621930 81 ntBASIC1.14□□□□□ -2.23
NPHP4O75161 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC1.14□□□□□ -2.23
NPHP4O75161 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.14□□□□□ -2.23
NPHP4O75161 RNU6-1127P-201ENST00000384580 107 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 MIR548B-201ENST00000385247 97 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 RNA5SP201-201ENST00000410316 124 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 MRPL35P3-201ENST00000421557 364 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC092783.1-201ENST00000435832 231 ntTSL 3 BASIC1.13□□□□□ -2.23
NPHP4O75161 AC013470.1-201ENST00000453438 462 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC087477.1-201ENST00000465747 340 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.13□□□□□ -2.23
NPHP4O75161 AK3P2-201ENST00000507976 429 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.13□□□□□ -2.23
NPHP4O75161 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.13□□□□□ -2.23
NPHP4O75161 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.13□□□□□ -2.23
NPHP4O75161 AC067942.3-201ENST00000512025 362 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 RNU2-69P-201ENST00000516061 100 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 SNORA18.6-201ENST00000516792 115 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 SNORA25.17-201ENST00000517184 124 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.13□□□□□ -2.23
NPHP4O75161 HMGB1P33-201ENST00000563485 527 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 MIR3923-201ENST00000579521 83 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.13□□□□□ -2.23
NPHP4O75161 AC091805.2-201ENST00000603848 235 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC064872.1-201ENST00000604823 1072 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 PCGEM1.1-201ENST00000613431 131 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC022418.1-201ENST00000624118 445 ntBASIC1.13□□□□□ -2.23
NPHP4O75161 AC100821.1-201ENST00000523153 2479 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNU6-862P-201ENST00000362804 105 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNU6-414P-201ENST00000363705 104 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNU6-108P-201ENST00000365558 107 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 SNORA32.2-201ENST00000384049 122 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 Y_RNA.504-201ENST00000384481 104 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNU6-456P-201ENST00000384493 107 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 MIR1267-201ENST00000408723 78 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC1.12□□□□□ -2.23
NPHP4O75161 AL117339.3-201ENST00000418733 162 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 MTCO2P34-201ENST00000421994 607 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC1.12□□□□□ -2.23
NPHP4O75161 SNAP23P1-201ENST00000433229 246 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AL135790.2-201ENST00000437701 267 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 HSPE1P9-201ENST00000440046 311 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC1.12□□□□□ -2.23
NPHP4O75161 RNA5SP269-201ENST00000459032 137 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RPL9P9-202ENST00000466501 579 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.12□□□□□ -2.23
NPHP4O75161 HMGN1P13-201ENST00000505795 138 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNU5F-4P-201ENST00000516581 114 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 RNA5SP437-201ENST00000517249 129 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AC109479.2-201ENST00000517842 174 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AHI1-212ENST00000528103 441 ntTSL 1 (best) BASIC1.12□□□□□ -2.23
NPHP4O75161 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.12□□□□□ -2.23
NPHP4O75161 AGGF1P4-201ENST00000568249 801 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 MIR4703-201ENST00000577728 79 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 AP001506.1-201ENST00000615444 211 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.12□□□□□ -2.23
NPHP4O75161 AL450472.1-202ENST00000637286 180 ntBASIC1.12□□□□□ -2.23
NPHP4O75161 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.12□□□□□ -2.23
NPHP4O75161 AL159152.1-201ENST00000635019 2587 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 RNU6-552P-201ENST00000362869 119 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.11□□□□□ -2.23
NPHP4O75161 RPS29P13-201ENST00000402041 169 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 RNU2-9P-201ENST00000410194 145 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 RNU4-46P-201ENST00000410818 138 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 SCARNA18-201ENST00000459004 134 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 AL163973.1-201ENST00000484753 577 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 AC079382.1-201ENST00000493346 557 ntBASIC1.11□□□□□ -2.23
NPHP4O75161 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.11□□□□□ -2.23
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms