Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 AC027124.2-201ENST00000428249 105 ntBASIC3.22□□□□□ -1.89
CBX4O00257 RPS12P18-201ENST00000442381 270 ntBASIC3.22□□□□□ -1.89
CBX4O00257 AC007395.1-201ENST00000451333 677 ntBASIC3.22□□□□□ -1.89
CBX4O00257 AC091179.1-201ENST00000461606 579 ntBASIC3.22□□□□□ -1.89
CBX4O00257 Y_RNA.668-201ENST00000516233 93 ntBASIC3.22□□□□□ -1.89
CBX4O00257 SCARNA3-201ENST00000517097 143 ntBASIC3.22□□□□□ -1.89
CBX4O00257 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.22□□□□□ -1.89
CBX4O00257 MIR4300-201ENST00000581016 96 ntBASIC3.22□□□□□ -1.89
CBX4O00257 UBL5P2-201ENST00000583788 219 ntBASIC3.22□□□□□ -1.89
CBX4O00257 TCL6_2.1-201ENST00000615162 119 ntBASIC3.22□□□□□ -1.89
CBX4O00257 AL137790.1-201ENST00000634283 177 ntBASIC3.22□□□□□ -1.89
CBX4O00257 AC007218.2-201ENST00000636913 179 ntTSL 5 BASIC3.22□□□□□ -1.89
CBX4O00257 ZBTB20-201ENST00000357258 27125 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CBX4O00257 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
CBX4O00257 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.22□□□□□ -1.89
CBX4O00257 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC3.21□□□□□ -1.89
CBX4O00257 PHF3-202ENST00000393387 6947 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CBX4O00257 Y_RNA.376-201ENST00000365638 108 ntBASIC3.21□□□□□ -1.9
CBX4O00257 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC3.21□□□□□ -1.9
CBX4O00257 SNORD21-201ENST00000383953 95 ntBASIC3.21□□□□□ -1.9
CBX4O00257 SNORA44-201ENST00000384584 132 ntBASIC3.21□□□□□ -1.9
CBX4O00257 MIR218-1-201ENST00000384999 110 ntBASIC3.21□□□□□ -1.9
CBX4O00257 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.21□□□□□ -1.9
CBX4O00257 AC096920.1-201ENST00000423991 241 ntBASIC3.21□□□□□ -1.9
CBX4O00257 UQCRBP2-201ENST00000447827 297 ntBASIC3.21□□□□□ -1.9
CBX4O00257 AC146507.2-201ENST00000460608 476 ntBASIC3.21□□□□□ -1.9
CBX4O00257 RPS27P29-201ENST00000463110 252 ntBASIC3.21□□□□□ -1.9
CBX4O00257 SNORA40.9-201ENST00000515895 93 ntBASIC3.21□□□□□ -1.9
CBX4O00257 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC3.21□□□□□ -1.9
CBX4O00257 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.21□□□□□ -1.9
CBX4O00257 MIR3199-1-201ENST00000582434 88 ntBASIC3.21□□□□□ -1.9
CBX4O00257 AC062037.2-201ENST00000610137 73 ntBASIC3.21□□□□□ -1.9
CBX4O00257 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.21□□□□□ -1.9
CBX4O00257 HIF1A-201ENST00000323441 3555 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
CBX4O00257 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.21□□□□□ -1.9
CBX4O00257 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CBX4O00257 THOC2-201ENST00000245838 5609 ntAPPRIS P1 TSL 5 BASIC3.21□□□□□ -1.9
CBX4O00257 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.2□□□□□ -1.9
CBX4O00257 Y_RNA.105-201ENST00000363182 111 ntBASIC3.2□□□□□ -1.9
CBX4O00257 SNORA7.4-201ENST00000384249 137 ntBASIC3.2□□□□□ -1.9
CBX4O00257 SNORD15B-201ENST00000384714 146 ntBASIC3.2□□□□□ -1.9
CBX4O00257 SNORD115-46-201ENST00000390982 71 ntBASIC3.2□□□□□ -1.9
CBX4O00257 U6atac.2-201ENST00000408644 118 ntBASIC3.2□□□□□ -1.9
CBX4O00257 RNU6-121P-201ENST00000410525 99 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC3.2□□□□□ -1.9
CBX4O00257 RPL30P4-201ENST00000429309 333 ntBASIC3.2□□□□□ -1.9
CBX4O00257 TRBVB-201ENST00000477100 408 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AC074133.1-201ENST00000515696 183 ntBASIC3.2□□□□□ -1.9
CBX4O00257 RNU6-570P-201ENST00000517051 105 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AC110588.1-201ENST00000559699 137 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AC136932.1-201ENST00000574771 208 ntBASIC3.2□□□□□ -1.9
CBX4O00257 MIR3124-201ENST00000582636 67 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC3.2□□□□□ -1.9
CBX4O00257 RPL17P51-201ENST00000605218 238 ntBASIC3.2□□□□□ -1.9
CBX4O00257 AC069294.1-201ENST00000608397 350 ntBASIC3.2□□□□□ -1.9
CBX4O00257 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.2□□□□□ -1.9
CBX4O00257 AC073476.4-201ENST00000628409 72 ntBASIC3.2□□□□□ -1.9
CBX4O00257 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CBX4O00257 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CBX4O00257 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.2□□□□□ -1.9
CBX4O00257 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC3.2□□□□□ -1.9
CBX4O00257 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.2□□□□□ -1.9
CBX4O00257 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CBX4O00257 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
CBX4O00257 Y_RNA.188-201ENST00000363952 111 ntBASIC3.19□□□□□ -1.9
CBX4O00257 SNORA18.2-201ENST00000383865 132 ntBASIC3.19□□□□□ -1.9
CBX4O00257 Y_RNA.462-201ENST00000384268 102 ntBASIC3.19□□□□□ -1.9
CBX4O00257 RNU6-1328P-201ENST00000410938 106 ntBASIC3.19□□□□□ -1.9
CBX4O00257 RPL21P38-201ENST00000418090 167 ntBASIC3.19□□□□□ -1.9
CBX4O00257 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.19□□□□□ -1.9
CBX4O00257 AC004386.2-201ENST00000441858 148 ntBASIC3.19□□□□□ -1.9
CBX4O00257 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC3.19□□□□□ -1.9
CBX4O00257 IFNA11P-201ENST00000446352 526 ntBASIC3.19□□□□□ -1.9
CBX4O00257 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.19□□□□□ -1.9
CBX4O00257 AC091179.3-201ENST00000474761 144 ntBASIC3.19□□□□□ -1.9
CBX4O00257 SCARNA20.6-201ENST00000517251 106 ntBASIC3.19□□□□□ -1.9
CBX4O00257 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.19□□□□□ -1.9
CBX4O00257 AC105245.1-201ENST00000581934 244 ntBASIC3.19□□□□□ -1.9
CBX4O00257 MIR5006-201ENST00000583027 110 ntBASIC3.19□□□□□ -1.9
CBX4O00257 AC010620.2-201ENST00000600135 313 ntBASIC3.19□□□□□ -1.9
CBX4O00257 MZT1P2-201ENST00000604387 248 ntBASIC3.19□□□□□ -1.9
CBX4O00257 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.19□□□□□ -1.9
CBX4O00257 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC3.19□□□□□ -1.9
CBX4O00257 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.19□□□□□ -1.9
CBX4O00257 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.19□□□□□ -1.9
CBX4O00257 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.19□□□□□ -1.9
CBX4O00257 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CBX4O00257 MAPK10-362ENST00000641864 4484 ntBASIC3.19□□□□□ -1.9
CBX4O00257 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CBX4O00257 SNORD63-201ENST00000384262 68 ntBASIC3.18□□□□□ -1.9
CBX4O00257 RNU6-472P-201ENST00000384299 107 ntBASIC3.18□□□□□ -1.9
CBX4O00257 RNU6-937P-201ENST00000384325 106 ntBASIC3.18□□□□□ -1.9
CBX4O00257 MT-TG-201ENST00000387429 68 ntBASIC3.18□□□□□ -1.9
CBX4O00257 AL031121.1-201ENST00000406553 254 ntBASIC3.18□□□□□ -1.9
CBX4O00257 Y_RNA.597-201ENST00000410463 100 ntBASIC3.18□□□□□ -1.9
CBX4O00257 RNA5SP293-201ENST00000410527 113 ntBASIC3.18□□□□□ -1.9
CBX4O00257 RNU5A-5P-201ENST00000411054 116 ntBASIC3.18□□□□□ -1.9
CBX4O00257 AC005002.2-201ENST00000438228 269 ntBASIC3.18□□□□□ -1.9
CBX4O00257 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.18□□□□□ -1.9
CBX4O00257 RNU6-408P-201ENST00000515910 100 ntBASIC3.18□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 133.5 ms