Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 U6.115-201ENST00000636045 103 ntBASIC4.26□□□□□ -1.73
NOD1Q9Y239 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
NOD1Q9Y239 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NOD1Q9Y239 CLIC2-202ENST00000369449 2655 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NOD1Q9Y239 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
NOD1Q9Y239 RNFT1-201ENST00000305783 2101 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 GLCE-202ENST00000559420 4840 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 MACC1-201ENST00000332878 2994 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 U3.8-201ENST00000363675 217 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 RNU6-899P-201ENST00000363947 107 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 MIR626-201ENST00000385032 94 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 MIR569-201ENST00000385228 96 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 TRAJ16-201ENST00000390521 60 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 AP000567.1-201ENST00000406413 156 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 CYCSP35-201ENST00000451978 304 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 AL136097.2-201ENST00000457003 333 ntTSL 2 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 SNRPGP3-201ENST00000469405 227 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 RNA5SP154-201ENST00000516193 111 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 LINC00508-201ENST00000538901 194 ntTSL 5 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC4.25□□□□□ -1.73
NOD1Q9Y239 FAM208A-202ENST00000431842 7119 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
NOD1Q9Y239 C4orf17-204ENST00000514652 2542 ntAPPRIS ALT2 TSL 5 BASIC4.25□□□□□ -1.73
NOD1Q9Y239 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NOD1Q9Y239 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NOD1Q9Y239 Y_RNA.341-201ENST00000365341 102 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 Y_RNA.368-201ENST00000365547 113 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 MIR183-201ENST00000384958 110 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 SNORA12-201ENST00000391162 147 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 RNU6-735P-201ENST00000410612 107 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 AC106707.2-201ENST00000484182 374 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 RPL36AP48-201ENST00000485521 314 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
NOD1Q9Y239 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 Y_RNA.802-201ENST00000614892 130 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 AC073346.2-201ENST00000624724 2058 ntBASIC4.24□□□□□ -1.73
NOD1Q9Y239 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.24□□□□□ -1.73
NOD1Q9Y239 AC100821.1-201ENST00000523153 2479 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NOD1Q9Y239 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NOD1Q9Y239 PPIP5K2-217ENST00000627916 6010 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 SNORA22C-201ENST00000384614 134 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 RNA5SP252-201ENST00000391131 119 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 AL355497.1-201ENST00000406262 551 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 RNU6-257P-201ENST00000410238 98 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 AC069285.2-201ENST00000440210 275 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 RN7SL585P-201ENST00000470538 280 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 RN7SL293P-201ENST00000481765 281 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 AC010409.1-201ENST00000487382 476 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 RNU7-121P-201ENST00000516604 62 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 MIR548X2-201ENST00000579776 100 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 5S_rRNA.16-201ENST00000612928 119 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 U6.105-201ENST00000637379 88 ntBASIC4.23□□□□□ -1.73
NOD1Q9Y239 VGLL4-219ENST00000638314 93 ntTSL 5 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
NOD1Q9Y239 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 CNOT2-231ENST00000551483 4753 ntTSL 2 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.23□□□□□ -1.73
NOD1Q9Y239 ENOX2-202ENST00000370927 3788 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
NOD1Q9Y239 ADGRG2-205ENST00000357991 4661 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
NOD1Q9Y239 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
NOD1Q9Y239 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC4.22□□□□□ -1.73
NOD1Q9Y239 Y_RNA.24-201ENST00000362508 103 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 SNORA9-201ENST00000384215 133 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 Y_RNA.456-201ENST00000384232 111 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 Y_RNA.572-201ENST00000384757 98 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 MIR548B-201ENST00000385247 97 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 RNU6-1168P-201ENST00000390831 104 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC083863.1-201ENST00000438811 231 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 RPL23AP62-201ENST00000463396 453 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 SRIP1-201ENST00000489235 288 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 SRI-210ENST00000490437 570 ntTSL 2 BASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC103879.1-201ENST00000503093 255 ntTSL 2 BASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC107027.2-201ENST00000512197 115 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 SNORA74D-201ENST00000516404 141 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC022616.8-201ENST00000533569 253 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC079598.5-201ENST00000547460 117 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AL365222.1-201ENST00000614661 98 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC006111.3-201ENST00000622137 383 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 AC008873.1-201ENST00000625051 138 ntBASIC4.22□□□□□ -1.73
NOD1Q9Y239 RANBP6-201ENST00000259569 4576 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
NOD1Q9Y239 WHAMMP2-201ENST00000512149 5482 ntTSL 5 BASIC4.22□□□□□ -1.73
NOD1Q9Y239 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NOD1Q9Y239 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
NOD1Q9Y239 RNF17-201ENST00000255324 5119 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.73
NOD1Q9Y239 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 279.5 ms