Protein–RNA interactions for Protein: Q9NUW8

TDP1, Tyrosyl-DNA phosphodiesterase 1, humanhuman

Predictions only

Length 608 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1Q9NUW8 Y_RNA.47-201ENST00000362697 108 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 RNU6-1301P-201ENST00000362724 104 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 SNORD56.3-201ENST00000363507 71 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.149-201ENST00000363558 117 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.152-201ENST00000363578 100 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 RNU6-463P-201ENST00000384340 107 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 MIR10B-201ENST00000385011 110 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 MIR208B-201ENST00000401172 77 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 RNA5SP274-201ENST00000410484 108 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 EIF4EP4-201ENST00000424916 578 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 WARS2P1-201ENST00000429678 537 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC105272.1-201ENST00000438604 198 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 SNORA64.4-201ENST00000516632 81 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 COX6CP5-201ENST00000527162 228 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC090517.1-201ENST00000569307 266 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 7SK.10-201ENST00000621414 298 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 TTK-211ENST00000627129 240 ntTSL 5 BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 U6.92-201ENST00000636464 89 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC099654.7-201ENST00000635788 2127 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 AC096644.4-201ENST00000563417 2912 ntBASIC3.05□□□□□ -1.92
TDP1Q9NUW8 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.176-201ENST00000363815 109 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 SNORA9.2-201ENST00000365361 133 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNU6-574P-201ENST00000384265 107 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.471-201ENST00000384312 102 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNU6-196P-201ENST00000384315 107 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 Y_RNA.574-201ENST00000384766 95 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNU6-1093P-201ENST00000391194 107 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNA5SP201-201ENST00000410316 124 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNU6-1328P-201ENST00000410938 106 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC096638.1-201ENST00000444678 216 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC073910.1-201ENST00000445047 438 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC092185.1-201ENST00000491371 97 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RNU6-1198P-201ENST00000516904 67 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 MIR5695-201ENST00000579717 85 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC103810.1-201ENST00000579873 453 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 MIR4672-201ENST00000583126 81 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC125232.2-201ENST00000592457 143 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AP000942.4-201ENST00000604811 241 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 AC005296.1-201ENST00000616145 209 ntBASIC3.04□□□□□ -1.92
TDP1Q9NUW8 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.04□□□□□ -1.92
TDP1Q9NUW8 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 snoU2_19.1-201ENST00000362361 80 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-486P-201ENST00000363116 107 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-879P-201ENST00000364328 108 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 SET-203ENST00000372688 801 ntTSL 2 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-318P-201ENST00000384283 103 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-378P-201ENST00000384324 107 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-1109P-201ENST00000391187 107 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RPEP5-201ENST00000441137 268 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RPS3P1-201ENST00000456781 192 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AC146507.2-201ENST00000460608 476 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AC007215.1-201ENST00000464893 276 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 SEM1P1-201ENST00000506694 209 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RN7SKP132-201ENST00000516001 208 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNU6-397P-201ENST00000516226 104 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNA5SP54-201ENST00000516951 92 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 HSPE1P20-201ENST00000538133 289 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 MIR4503-201ENST00000582187 83 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 MIR7515-201ENST00000637837 67 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AL035425.3-201ENST00000564206 4996 ntBASIC3.03□□□□□ -1.92
TDP1Q9NUW8 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC3.03□□□□□ -1.92
TDP1Q9NUW8 RNA5SP361-201ENST00000362686 118 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 RNU6-238P-201ENST00000363313 106 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 SNORA18.3-201ENST00000384122 132 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 RNU6-281P-201ENST00000384212 103 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 Y_RNA.458-201ENST00000384240 102 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 MIR549A-201ENST00000385268 96 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 RPL21P1-201ENST00000399532 476 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AL031121.1-201ENST00000406553 254 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 RNU6-130P-201ENST00000411112 103 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.02□□□□□ -1.93
TDP1Q9NUW8 SDAD1P3-201ENST00000427380 333 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC3.02□□□□□ -1.93
TDP1Q9NUW8 FCF1P4-201ENST00000448326 183 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AC145146.1-201ENST00000496370 254 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AC093023.1-201ENST00000547375 507 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AL121655.1-201ENST00000605811 308 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 AC004832.5-201ENST00000608677 401 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 PCGEM1.1-201ENST00000613431 131 ntBASIC3.02□□□□□ -1.93
TDP1Q9NUW8 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.02□□□□□ -1.93
TDP1Q9NUW8 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 115.8 ms