Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 RAP1BP2-201ENST00000478270 544 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 Y_RNA.670-201ENST00000516255 105 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 RN7SKP88-201ENST00000516847 250 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 NTS-203ENST00000551529 801 ntTSL 3 BASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 LINC02290-203ENST00000556662 577 ntTSL 4 BASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 AC021231.3-201ENST00000558497 370 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 AC078795.3-201ENST00000602913 472 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 AC091304.9-201ENST00000612091 226 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 7SK.8-201ENST00000612110 250 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 7SK.11-201ENST00000615477 250 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 7SK.13-201ENST00000622040 250 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 AC138649.3-201ENST00000622154 254 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 MTND4P14-201ENST00000435799 1354 ntBASIC0.82□□□□□ -2.28
CCDC112Q8NEF3 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RNU6-500P-201ENST00000362349 107 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 SNORD114-26-201ENST00000363543 72 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RNU1-96P-201ENST00000364163 162 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RNU6-1303P-201ENST00000364841 107 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 Y_RNA.540-201ENST00000384638 111 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 MIR513B-201ENST00000385136 84 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RPS29P13-201ENST00000402041 169 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC006461.1-201ENST00000412637 326 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RPL23AP95-201ENST00000426806 265 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AL133396.1-201ENST00000432048 687 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AL445305.1-201ENST00000432577 575 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 SNAP23P1-201ENST00000433229 246 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 MTND5P15-201ENST00000434246 349 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC007395.1-201ENST00000451333 677 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RPL31P3-201ENST00000458430 332 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AL163195.1-201ENST00000496941 348 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 LINC02465-202ENST00000508724 503 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 Y_RNA.672-201ENST00000516289 104 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 SCARNA16.2-201ENST00000516520 172 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 RNA5SP384-201ENST00000516615 116 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC109479.2-201ENST00000517842 174 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 EIF4A1P12-201ENST00000551910 141 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 MIR4698-201ENST00000577795 80 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC005771.1-201ENST00000585581 349 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AL356157.2-201ENST00000605122 111 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 PVT1_3.1-201ENST00000620853 95 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AC011155.2-201ENST00000623202 216 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 AP000720.1-201ENST00000625091 483 ntBASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 PPP2R5A-205ENST00000537030 1719 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC112Q8NEF3 MTND5P17-201ENST00000418405 1603 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 RNU1-76P-201ENST00000362903 159 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 RNU6-331P-201ENST00000384724 107 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 MIR620-201ENST00000385232 95 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 RNU6-550P-201ENST00000391057 101 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AL356776.1-201ENST00000406574 447 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 POLR2J4-204ENST00000418424 324 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AL606490.4-201ENST00000423117 127 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 SNX2P2-201ENST00000424553 323 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AC004854.1-201ENST00000440356 349 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 HSPE1P13-201ENST00000451143 297 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 snoU13.27-201ENST00000459278 104 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 RNU6-1041P-201ENST00000516254 102 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 RNU5F-4P-201ENST00000516581 114 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AC090572.1-201ENST00000519251 160 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 CYCSP23-201ENST00000519781 313 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AC022878.1-201ENST00000530684 149 ntBASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC112Q8NEF3 AC092268.1-201ENST00000342691 405 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU4-56P-201ENST00000364700 142 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU1-133P-201ENST00000364867 167 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU1-36P-201ENST00000365130 165 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU6-715P-201ENST00000365204 103 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 SNORA20.2-201ENST00000383922 131 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 MTCO2P8-201ENST00000412213 658 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 SSR1P2-201ENST00000415208 787 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC098592.1-201ENST00000419352 333 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC060773.1-201ENST00000421698 310 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AL356583.2-201ENST00000426536 280 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 MTCO3P29-201ENST00000432119 779 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC073910.1-201ENST00000445047 438 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 RNU6-856P-201ENST00000516959 98 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AL442163.3-201ENST00000554110 156 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC133485.1-201ENST00000567176 124 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC138907.6-201ENST00000568401 126 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 MIR3664-201ENST00000579074 99 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 MTCO2P2-201ENST00000591258 225 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC008751.2-201ENST00000597885 980 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AL391646.1-201ENST00000603860 190 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC112191.3-201ENST00000604371 277 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC008147.4-201ENST00000617570 1204 ntBASIC0.79□□□□□ -2.28
CCDC112Q8NEF3 AC126177.8-201ENST00000618339 1015 ntBASIC0.79□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 322 ms