Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 RNU1-75P-201ENST00000347264 129 ntBASIC3.47□□□□□ -1.85
RNF4P78317 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC3.47□□□□□ -1.85
RNF4P78317 Y_RNA.398-201ENST00000383952 99 ntBASIC3.47□□□□□ -1.85
RNF4P78317 RNU6-763P-201ENST00000390865 106 ntBASIC3.47□□□□□ -1.85
RNF4P78317 RNA5SP424-201ENST00000390988 115 ntBASIC3.47□□□□□ -1.85
RNF4P78317 RNU6ATAC34P-201ENST00000408879 121 ntBASIC3.47□□□□□ -1.85
RNF4P78317 RNU6-1077P-201ENST00000410506 102 ntBASIC3.47□□□□□ -1.85
RNF4P78317 TRBV12-2-201ENST00000489763 344 ntBASIC3.47□□□□□ -1.85
RNF4P78317 RNU7-200P-201ENST00000516105 62 ntBASIC3.47□□□□□ -1.85
RNF4P78317 AC079598.5-201ENST00000547460 117 ntBASIC3.47□□□□□ -1.85
RNF4P78317 CR392039.5-201ENST00000623201 510 ntBASIC3.47□□□□□ -1.85
RNF4P78317 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.47□□□□□ -1.85
RNF4P78317 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
RNF4P78317 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.47□□□□□ -1.85
RNF4P78317 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.47□□□□□ -1.85
RNF4P78317 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.46□□□□□ -1.85
RNF4P78317 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.46□□□□□ -1.86
RNF4P78317 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.46□□□□□ -1.86
RNF4P78317 IQCH-201ENST00000335894 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.86
RNF4P78317 CKAP5-201ENST00000312055 6532 ntTSL 5 BASIC3.46□□□□□ -1.86
RNF4P78317 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC3.46□□□□□ -1.86
RNF4P78317 RNU6-1248P-201ENST00000391096 64 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AL135790.2-201ENST00000437701 267 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AL133547.1-201ENST00000448546 220 ntBASIC3.46□□□□□ -1.86
RNF4P78317 Y_RNA.637-201ENST00000459424 114 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AC091179.1-201ENST00000461606 579 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AC140059.1-201ENST00000489238 361 ntBASIC3.46□□□□□ -1.86
RNF4P78317 SNORA51-201ENST00000606420 132 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AC006133.1-201ENST00000617106 264 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AC039056.2-201ENST00000622261 511 ntBASIC3.46□□□□□ -1.86
RNF4P78317 AC132825.6-201ENST00000638861 357 ntBASIC3.46□□□□□ -1.86
RNF4P78317 LTN1-207ENST00000614971 7756 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
RNF4P78317 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
RNF4P78317 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 PCLO-206ENST00000437081 3786 ntTSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 RNA5SP124-201ENST00000362739 110 ntBASIC3.45□□□□□ -1.86
RNF4P78317 SNORD115-30-201ENST00000364117 82 ntBASIC3.45□□□□□ -1.86
RNF4P78317 SNORA62.3-201ENST00000365110 153 ntBASIC3.45□□□□□ -1.86
RNF4P78317 Y_RNA.571-201ENST00000384753 98 ntBASIC3.45□□□□□ -1.86
RNF4P78317 PTMAP2-201ENST00000397627 327 ntBASIC3.45□□□□□ -1.86
RNF4P78317 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 AL031003.1-201ENST00000404229 172 ntBASIC3.45□□□□□ -1.86
RNF4P78317 RNU2-2P-201ENST00000410396 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 RNU6-1135P-201ENST00000411083 103 ntBASIC3.45□□□□□ -1.86
RNF4P78317 RNU5E-9P-201ENST00000411164 104 ntBASIC3.45□□□□□ -1.86
RNF4P78317 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.45□□□□□ -1.86
RNF4P78317 AL365496.1-201ENST00000426885 215 ntBASIC3.45□□□□□ -1.86
RNF4P78317 TMSB4XP3-201ENST00000445144 114 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U8.19-201ENST00000459095 133 ntBASIC3.45□□□□□ -1.86
RNF4P78317 SNORA84-201ENST00000459229 133 ntBASIC3.45□□□□□ -1.86
RNF4P78317 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.45□□□□□ -1.86
RNF4P78317 AC107958.3-201ENST00000553410 431 ntTSL 3 BASIC3.45□□□□□ -1.86
RNF4P78317 AC009127.3-201ENST00000570531 403 ntBASIC3.45□□□□□ -1.86
RNF4P78317 RNU2-4P-201ENST00000606190 192 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.15-201ENST00000611544 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.16-201ENST00000613119 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.12-201ENST00000613778 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.9-201ENST00000615427 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.11-201ENST00000616345 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.2-201ENST00000616535 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.3-201ENST00000617785 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.19-201ENST00000618602 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 RNU2-1-201ENST00000618664 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.6-201ENST00000619225 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.5-201ENST00000619465 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 U2.10-201ENST00000620268 191 ntBASIC3.45□□□□□ -1.86
RNF4P78317 AL034408.1-202ENST00000636088 415 ntBASIC3.45□□□□□ -1.86
RNF4P78317 NDST4-201ENST00000264363 3351 ntAPPRIS P1 TSL 1 (best) BASIC3.45□□□□□ -1.86
RNF4P78317 AL161912.2-201ENST00000565707 3007 ntBASIC3.45□□□□□ -1.86
RNF4P78317 CYYR1-AS1-201ENST00000357401 3412 ntTSL 2 BASIC3.45□□□□□ -1.86
RNF4P78317 RMDN2-205ENST00000407257 2280 ntTSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 KCNJ16-209ENST00000589377 3684 ntAPPRIS P1 TSL 5 BASIC3.45□□□□□ -1.86
RNF4P78317 AC026241.1-201ENST00000517873 2142 ntBASIC3.44□□□□□ -1.86
RNF4P78317 RTN4-209ENST00000405240 4061 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
RNF4P78317 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.44□□□□□ -1.86
RNF4P78317 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.44□□□□□ -1.86
RNF4P78317 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.44□□□□□ -1.86
RNF4P78317 RNY1P5-201ENST00000383890 115 ntBASIC3.44□□□□□ -1.86
RNF4P78317 SNORA48.8-201ENST00000391324 134 ntBASIC3.44□□□□□ -1.86
RNF4P78317 RN7SKP27-201ENST00000410684 333 ntBASIC3.44□□□□□ -1.86
RNF4P78317 RNU6-394P-201ENST00000410735 107 ntBASIC3.44□□□□□ -1.86
RNF4P78317 AL035423.1-201ENST00000420331 213 ntBASIC3.44□□□□□ -1.86
RNF4P78317 AL606753.1-201ENST00000427435 87 ntBASIC3.44□□□□□ -1.86
RNF4P78317 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.44□□□□□ -1.86
RNF4P78317 RNU1-95P-201ENST00000516357 160 ntBASIC3.44□□□□□ -1.86
RNF4P78317 RNU1-128P-201ENST00000516704 160 ntBASIC3.44□□□□□ -1.86
RNF4P78317 MIR1254-2-201ENST00000579553 63 ntBASIC3.44□□□□□ -1.86
RNF4P78317 AL670379.2-201ENST00000604983 252 ntBASIC3.44□□□□□ -1.86
RNF4P78317 uc_338.14-201ENST00000613162 166 ntBASIC3.44□□□□□ -1.86
RNF4P78317 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
RNF4P78317 AC012442.3-202ENST00000636742 206 ntBASIC3.44□□□□□ -1.86
RNF4P78317 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC3.44□□□□□ -1.86
RNF4P78317 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.44□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 140.2 ms