Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SOX3P41225 HMGB3P2-201ENST00000411913 584 ntBASIC2.05□□□□□ -2.08
SOX3P41225 DPH3P2-201ENST00000422618 250 ntBASIC2.05□□□□□ -2.08
SOX3P41225 AC012306.1-201ENST00000423267 114 ntBASIC2.05□□□□□ -2.08
SOX3P41225 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SOX3P41225 RNU7-26P-201ENST00000458980 63 ntBASIC2.05□□□□□ -2.08
SOX3P41225 MTND4P17-201ENST00000470444 350 ntBASIC2.05□□□□□ -2.08
SOX3P41225 AC079804.2-201ENST00000490376 200 ntBASIC2.05□□□□□ -2.08
SOX3P41225 CKS1BP2-201ENST00000497342 240 ntBASIC2.05□□□□□ -2.08
SOX3P41225 AC005741.1-201ENST00000511094 432 ntBASIC2.05□□□□□ -2.08
SOX3P41225 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.05□□□□□ -2.08
SOX3P41225 Y_RNA.708-201ENST00000516950 96 ntBASIC2.05□□□□□ -2.08
SOX3P41225 SNRPGP18-201ENST00000553000 214 ntBASIC2.05□□□□□ -2.08
SOX3P41225 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.05□□□□□ -2.08
SOX3P41225 CYP4A27P-201ENST00000567218 190 ntBASIC2.05□□□□□ -2.08
SOX3P41225 RPS3AP23-202ENST00000574601 686 ntBASIC2.05□□□□□ -2.08
SOX3P41225 MIR4273-201ENST00000582824 84 ntBASIC2.05□□□□□ -2.08
SOX3P41225 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC2.05□□□□□ -2.08
SOX3P41225 AL670379.2-201ENST00000604983 252 ntBASIC2.05□□□□□ -2.08
SOX3P41225 AC005520.5-201ENST00000613926 164 ntBASIC2.05□□□□□ -2.08
SOX3P41225 AP000553.5-201ENST00000641933 54 ntBASIC2.05□□□□□ -2.08
SOX3P41225 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
SOX3P41225 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.04□□□□□ -2.08
SOX3P41225 RNU6-968P-201ENST00000384076 107 ntBASIC2.04□□□□□ -2.08
SOX3P41225 RNU6-1274P-201ENST00000384557 107 ntBASIC2.04□□□□□ -2.08
SOX3P41225 MTCYBP2-201ENST00000407745 171 ntBASIC2.04□□□□□ -2.08
SOX3P41225 RNA5SP201-201ENST00000410316 124 ntBASIC2.04□□□□□ -2.08
SOX3P41225 Y_RNA.594-201ENST00000410373 140 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC096638.1-201ENST00000444678 216 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.04□□□□□ -2.08
SOX3P41225 FO393415.2-201ENST00000480085 343 ntBASIC2.04□□□□□ -2.08
SOX3P41225 MTND5P9-201ENST00000503854 1755 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC021146.2-201ENST00000504736 556 ntBASIC2.04□□□□□ -2.08
SOX3P41225 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.04□□□□□ -2.08
SOX3P41225 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.04□□□□□ -2.08
SOX3P41225 Y_RNA.670-201ENST00000516255 105 ntBASIC2.04□□□□□ -2.08
SOX3P41225 SNORA48.11-201ENST00000517015 89 ntBASIC2.04□□□□□ -2.08
SOX3P41225 CBX3P7-201ENST00000532876 502 ntBASIC2.04□□□□□ -2.08
SOX3P41225 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.04□□□□□ -2.08
SOX3P41225 RAB11AP2-201ENST00000545905 639 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC121758.2-201ENST00000553271 193 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC109446.1-201ENST00000566172 220 ntBASIC2.04□□□□□ -2.08
SOX3P41225 MIR5694-201ENST00000581190 76 ntBASIC2.04□□□□□ -2.08
SOX3P41225 MIR4658-201ENST00000584344 65 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.04□□□□□ -2.08
SOX3P41225 AL117336.2-201ENST00000602435 335 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AL355297.2-201ENST00000604792 129 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AP000654.2-201ENST00000605633 586 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC233981.2-201ENST00000611524 1614 ntBASIC2.04□□□□□ -2.08
SOX3P41225 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC063943.3-201ENST00000615562 356 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AL359757.2-201ENST00000624309 274 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC090517.3-201ENST00000625170 141 ntBASIC2.04□□□□□ -2.08
SOX3P41225 AC112487.2-201ENST00000637950 304 ntBASIC2.04□□□□□ -2.08
SOX3P41225 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.03□□□□□ -2.08
SOX3P41225 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.03□□□□□ -2.08
SOX3P41225 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.03□□□□□ -2.08
SOX3P41225 Y_RNA.473-201ENST00000384333 102 ntBASIC2.03□□□□□ -2.08
SOX3P41225 Y_RNA.529-201ENST00000384586 119 ntBASIC2.03□□□□□ -2.08
SOX3P41225 MIR561-201ENST00000385216 97 ntBASIC2.03□□□□□ -2.08
SOX3P41225 AC022028.1-201ENST00000412054 408 ntBASIC2.03□□□□□ -2.08
SOX3P41225 RPL23AP75-201ENST00000491601 451 ntBASIC2.03□□□□□ -2.08
SOX3P41225 RPS29P21-201ENST00000496272 170 ntBASIC2.03□□□□□ -2.08
SOX3P41225 AC145146.1-201ENST00000496370 254 ntBASIC2.03□□□□□ -2.08
SOX3P41225 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.03□□□□□ -2.08
SOX3P41225 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC2.03□□□□□ -2.08
SOX3P41225 AC018630.3-201ENST00000542637 96 ntBASIC2.03□□□□□ -2.08
SOX3P41225 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.03□□□□□ -2.08
SOX3P41225 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.03□□□□□ -2.08
SOX3P41225 AC116312.1-201ENST00000606841 314 ntBASIC2.03□□□□□ -2.08
SOX3P41225 PCGEM1.1-201ENST00000613431 131 ntBASIC2.03□□□□□ -2.08
SOX3P41225 Y_RNA.804-201ENST00000615262 101 ntBASIC2.03□□□□□ -2.08
SOX3P41225 HMGB1P24-202ENST00000615653 685 ntBASIC2.03□□□□□ -2.08
SOX3P41225 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.03□□□□□ -2.08
SOX3P41225 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC2.02□□□□□ -2.09
SOX3P41225 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.02□□□□□ -2.09
SOX3P41225 RNU6-944P-201ENST00000364023 107 ntBASIC2.02□□□□□ -2.09
SOX3P41225 Y_RNA.387-201ENST00000383918 102 ntBASIC2.02□□□□□ -2.09
SOX3P41225 SNORA75.4-201ENST00000391278 119 ntBASIC2.02□□□□□ -2.09
SOX3P41225 Y_RNA.597-201ENST00000410463 100 ntBASIC2.02□□□□□ -2.09
SOX3P41225 RNA5SP338-201ENST00000410495 85 ntBASIC2.02□□□□□ -2.09
SOX3P41225 RNU2-41P-201ENST00000410991 178 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AL590556.1-201ENST00000423231 483 ntBASIC2.02□□□□□ -2.09
SOX3P41225 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.02□□□□□ -2.09
SOX3P41225 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2.02□□□□□ -2.09
SOX3P41225 RNU6-717P-201ENST00000459076 104 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AF186996.7-201ENST00000492781 209 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AC090255.1-201ENST00000495779 349 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.02□□□□□ -2.09
SOX3P41225 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.02□□□□□ -2.09
SOX3P41225 MIR4648-201ENST00000580107 72 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AC009229.3-201ENST00000608056 282 ntBASIC2.02□□□□□ -2.09
SOX3P41225 U4atac.1-201ENST00000618345 95 ntBASIC2.02□□□□□ -2.09
SOX3P41225 AC009831.4-201ENST00000620744 325 ntBASIC2.02□□□□□ -2.09
SOX3P41225 MIR6132-201ENST00000622083 109 ntBASIC2.02□□□□□ -2.09
SOX3P41225 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.02□□□□□ -2.09
SOX3P41225 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.02□□□□□ -2.09
SOX3P41225 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.02□□□□□ -2.09
SOX3P41225 KPNA2P1-201ENST00000458289 1591 ntBASIC2.02□□□□□ -2.09
SOX3P41225 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.01□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms