Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AC007064.1-201ENST00000412238 351 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 AC008134.1-201ENST00000420943 193 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC3.8□□□□□ -1.8
COL8A1P27658 RNU6-893P-201ENST00000458841 100 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 AC108751.2-201ENST00000469993 231 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC3.8□□□□□ -1.8
COL8A1P27658 RNA5SP367-201ENST00000516557 118 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.8□□□□□ -1.8
COL8A1P27658 EIF4A1P12-201ENST00000551910 141 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC3.8□□□□□ -1.8
COL8A1P27658 uc_338.4-201ENST00000616635 176 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 AC009093.8-201ENST00000641769 292 ntBASIC3.8□□□□□ -1.8
COL8A1P27658 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC3.8□□□□□ -1.8
COL8A1P27658 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC3.8□□□□□ -1.8
COL8A1P27658 GHR-208ENST00000612382 4699 ntAPPRIS P1 TSL 5 BASIC3.8□□□□□ -1.8
COL8A1P27658 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL8A1P27658 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC3.79□□□□□ -1.8
COL8A1P27658 AC073346.2-201ENST00000624724 2058 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 AP001273.1-201ENST00000624493 3152 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 Y_RNA.107-201ENST00000363190 121 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 CKS1BP6-201ENST00000424932 240 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 AL591419.1-201ENST00000427423 339 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 ARPP21-211ENST00000427542 568 ntTSL 4 BASIC3.79□□□□□ -1.8
COL8A1P27658 RPS26P2-201ENST00000440331 348 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 AC012671.1-201ENST00000451912 203 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 APOA2-207ENST00000470459 416 ntTSL 5 BASIC3.79□□□□□ -1.8
COL8A1P27658 AC108145.1-201ENST00000503770 153 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 RNU6-126P-201ENST00000516685 103 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 AC141557.1-201ENST00000540982 400 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 AL034555.1-201ENST00000604816 211 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 IGKV2OR2-2-201ENST00000605025 300 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 5S_rRNA.11-201ENST00000618635 84 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.79□□□□□ -1.8
COL8A1P27658 AC016588.2-201ENST00000632484 3021 ntBASIC3.79□□□□□ -1.8
COL8A1P27658 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC3.79□□□□□ -1.8
COL8A1P27658 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL8A1P27658 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
COL8A1P27658 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.79□□□□□ -1.8
COL8A1P27658 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.78□□□□□ -1.8
COL8A1P27658 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.78□□□□□ -1.8
COL8A1P27658 CACNB4-273ENST00000638091 4061 ntTSL 5 BASIC3.78□□□□□ -1.8
COL8A1P27658 CPHL1P-201ENST00000461341 3407 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.78□□□□□ -1.8
COL8A1P27658 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC3.78□□□□□ -1.8
COL8A1P27658 Y_RNA.198-201ENST00000364013 98 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 RNU6-1276P-201ENST00000365372 104 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 RNU6-242P-201ENST00000384359 107 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 MIR34B-201ENST00000385076 84 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 MIR548B-201ENST00000385247 97 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 MIR325-201ENST00000385260 98 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC3.78□□□□□ -1.8
COL8A1P27658 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.78□□□□□ -1.8
COL8A1P27658 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC3.78□□□□□ -1.8
COL8A1P27658 AL451007.1-201ENST00000595491 289 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 MIR6500-201ENST00000622700 86 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 MAPK10-304ENST00000641341 3984 ntBASIC3.78□□□□□ -1.8
COL8A1P27658 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.78□□□□□ -1.8
COL8A1P27658 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL8A1P27658 CDK14-201ENST00000265741 4953 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
COL8A1P27658 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
COL8A1P27658 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 KLRD1-204ENST00000381908 15549 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 ATG12-208ENST00000509910 4333 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 RNY1P1-201ENST00000364372 112 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 MIR3065-201ENST00000390137 79 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 PTMAP5-201ENST00000393073 333 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.77□□□□□ -1.81
COL8A1P27658 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.77□□□□□ -1.81
COL8A1P27658 AC023449.1-201ENST00000454464 154 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 AC010285.1-201ENST00000470580 392 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 AC083906.5-201ENST00000503722 328 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 AC024022.1-202ENST00000508911 394 ntTSL 2 BASIC3.77□□□□□ -1.81
COL8A1P27658 RNU2-44P-201ENST00000516795 194 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.77□□□□□ -1.81
COL8A1P27658 AC079587.1-201ENST00000603846 277 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 CLRN1-AS1.1-201ENST00000615643 79 ntBASIC3.77□□□□□ -1.81
COL8A1P27658 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC3.77□□□□□ -1.81
COL8A1P27658 DMD-229ENST00000619831 13734 ntAPPRIS ALT2 TSL 5 BASIC3.77□□□□□ -1.81
COL8A1P27658 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC3.77□□□□□ -1.81
COL8A1P27658 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC3.77□□□□□ -1.81
COL8A1P27658 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC3.77□□□□□ -1.81
COL8A1P27658 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC3.76□□□□□ -1.81
COL8A1P27658 DHX9P1-201ENST00000436565 3076 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 AC022893.2-201ENST00000564832 3296 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 AL133243.3-201ENST00000617415 3004 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 SEMA3D-201ENST00000284136 6265 ntAPPRIS P1 TSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL8A1P27658 FAM107B-229ENST00000622567 3510 ntAPPRIS P1 TSL 2 BASIC3.76□□□□□ -1.81
COL8A1P27658 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC3.76□□□□□ -1.81
COL8A1P27658 Y_RNA.366-201ENST00000365540 102 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 SNORA18.2-201ENST00000383865 132 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC3.76□□□□□ -1.81
COL8A1P27658 RNU6-1282P-201ENST00000516735 96 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 AC007751.1-201ENST00000529260 376 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 AC013762.1-201ENST00000531136 467 ntTSL 3 BASIC3.76□□□□□ -1.81
COL8A1P27658 IGLL4P-201ENST00000614590 133 ntBASIC3.76□□□□□ -1.81
COL8A1P27658 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC3.76□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 119.4 ms