Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 NDUFB4P10-201ENST00000452541 359 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC092185.1-201ENST00000491371 97 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 RN7SKP132-201ENST00000516001 208 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 RNA5SP367-201ENST00000516557 118 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 SCARNA24.2-201ENST00000516968 130 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 MIR4738-201ENST00000579134 87 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A1P12109 AL356157.2-201ENST00000605122 111 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 uc_338.1-201ENST00000612113 180 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 AC004792.1-201ENST00000614523 137 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A1P12109 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.53□□□□□ -1.84
COL6A1P12109 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
COL6A1P12109 AC000403.1-201ENST00000613696 3585 ntBASIC3.53□□□□□ -1.84
COL6A1P12109 BAZ2B-202ENST00000343439 2364 ntTSL 5 BASIC3.53□□□□□ -1.84
COL6A1P12109 AC073073.2-201ENST00000609827 2578 ntBASIC3.53□□□□□ -1.85
COL6A1P12109 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A1P12109 EVI5-201ENST00000370331 7403 ntAPPRIS P3 TSL 1 (best) BASIC3.52□□□□□ -1.85
COL6A1P12109 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.52□□□□□ -1.85
COL6A1P12109 RNU4-90P-201ENST00000362773 141 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 SNORD56.5-201ENST00000364281 72 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 Y_RNA.274-201ENST00000364714 101 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RNU6-290P-201ENST00000365212 101 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 Z98749.2-208ENST00000381646 500 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RNU6-937P-201ENST00000384325 106 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RPS15AP5-201ENST00000436276 388 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RPS15AP7-201ENST00000439294 405 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 AC104332.1-201ENST00000440471 797 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A1P12109 AC108938.1-201ENST00000451204 136 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RPL31P41-201ENST00000477967 372 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 RNU6-56P-201ENST00000516986 93 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 AC016256.1-201ENST00000547971 354 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A1P12109 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.52□□□□□ -1.85
COL6A1P12109 U2.14-201ENST00000615943 113 ntBASIC3.52□□□□□ -1.85
COL6A1P12109 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.52□□□□□ -1.85
COL6A1P12109 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC3.52□□□□□ -1.85
COL6A1P12109 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A1P12109 LIG4-205ENST00000614526 3884 ntTSL 2 BASIC3.51□□□□□ -1.85
COL6A1P12109 Y_RNA.269-201ENST00000364685 89 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU1-73P-201ENST00000383971 164 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 SNORD63-201ENST00000384262 68 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU6-541P-201ENST00000384709 110 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 MIR518D-201ENST00000385014 87 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 SNORA53-201ENST00000391141 249 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU1-139P-201ENST00000391307 165 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 MIR1298-201ENST00000408783 112 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU2-20P-201ENST00000410425 191 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AL121890.1-201ENST00000435457 205 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AC243964.1-201ENST00000441814 261 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 UBBP3-201ENST00000445497 241 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AC087477.1-201ENST00000465747 340 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RPL30P1-201ENST00000488676 339 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 SERF1AP1-201ENST00000514575 187 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU6-1114P-201ENST00000516022 107 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 RNU6-496P-201ENST00000516145 99 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.51□□□□□ -1.85
COL6A1P12109 MIR4319-201ENST00000577285 85 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AC037487.3-201ENST00000606668 112 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 AC011476.5-201ENST00000615594 130 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 OR4C16-201ENST00000623907 933 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A1P12109 U2.21-201ENST00000637295 81 ntBASIC3.51□□□□□ -1.85
COL6A1P12109 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
COL6A1P12109 MCF2-208ENST00000519895 3346 ntAPPRIS ALT2 TSL 2 BASIC3.51□□□□□ -1.85
COL6A1P12109 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.51□□□□□ -1.85
COL6A1P12109 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
COL6A1P12109 AC062016.1-201ENST00000355719 319 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 RNU6-942P-201ENST00000363002 107 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 RNU6-778P-201ENST00000363269 103 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 RNU6-1180P-201ENST00000364935 107 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 SNORD116-20-201ENST00000384529 92 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 AL139156.1-201ENST00000412785 841 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 NDUFS5P4-201ENST00000412983 318 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC3.5□□□□□ -1.85
COL6A1P12109 EIF1P2-201ENST00000428233 350 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 AC105272.1-201ENST00000438604 198 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 AC098831.1-201ENST00000440661 216 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 CENPBD1P1-201ENST00000464061 469 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 MRPS36P2-201ENST00000512569 299 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 RNU6-789P-201ENST00000517105 102 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 TGIF1P1-201ENST00000558095 802 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 AL512605.2-201ENST00000592972 256 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 IGHVIII-44-202ENST00000636235 289 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 MIR3199-2-201ENST00000636243 86 ntBASIC3.5□□□□□ -1.85
COL6A1P12109 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
COL6A1P12109 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.49□□□□□ -1.85
COL6A1P12109 AC093908.1-201ENST00000623125 8092 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
COL6A1P12109 GABRG2-229ENST00000641017 3628 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 AC131280.1-202ENST00000624067 4211 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 Y_RNA.83-201ENST00000363005 113 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 Y_RNA.150-201ENST00000363562 102 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 RNU6-926P-201ENST00000384075 107 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 RNA5SP184-201ENST00000411071 108 ntBASIC3.49□□□□□ -1.85
COL6A1P12109 Y_RNA.793-201ENST00000411222 111 ntBASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 85 ms