Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 RNU6-559P-201ENST00000516151 98 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 RNU6-581P-201ENST00000516214 105 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 Y_RNA.701-201ENST00000516812 110 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 RNU6-1213P-201ENST00000517075 94 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC1.82□□□□□ -2.12
HOXC4P09017 CBX3P7-201ENST00000532876 502 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.82□□□□□ -2.12
HOXC4P09017 APOOP3-201ENST00000536787 586 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC1.82□□□□□ -2.12
HOXC4P09017 MIR3935-201ENST00000583472 104 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 AC044792.1-201ENST00000593294 196 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 AC008749.1-201ENST00000597650 306 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 AC084781.2-201ENST00000615568 161 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 MIR5739-201ENST00000619803 80 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 SDR42E1P4-201ENST00000620894 481 ntBASIC1.82□□□□□ -2.12
HOXC4P09017 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.132-201ENST00000363421 102 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.138-201ENST00000363462 102 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.259-201ENST00000364619 101 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RNU6-1280P-201ENST00000365211 107 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RNU6-1329P-201ENST00000365664 107 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.387-201ENST00000383918 102 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.579-201ENST00000390939 94 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 MIR1294-201ENST00000408503 142 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RNU6-370P-201ENST00000411008 104 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RPL37P10-201ENST00000412884 288 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 CYCSP49-201ENST00000420810 319 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AF228730.4-201ENST00000421457 183 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC4P09017 AL078601.1-201ENST00000444542 271 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC107399.1-201ENST00000451226 265 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 CYP2C59P-201ENST00000457790 269 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RNU7-138P-201ENST00000459479 64 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 SNORD19B-201ENST00000459623 84 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC130509.1-201ENST00000464158 433 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 HMGB1P30-201ENST00000492455 606 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC104564.1-201ENST00000493028 407 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AKIRIN2P1-201ENST00000505898 352 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 RPL39P5-202ENST00000512505 151 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC4P09017 SMURF2P1-201ENST00000514992 481 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 ACA59.2-201ENST00000517061 156 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 Y_RNA.718-201ENST00000517110 102 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC087854.1-201ENST00000519706 414 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.81□□□□□ -2.12
HOXC4P09017 AC026371.1-201ENST00000551867 419 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC026462.3-202ENST00000564361 515 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC4P09017 MIR3683-201ENST00000580847 82 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 MIR4769-201ENST00000584126 77 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC078899.2-201ENST00000595282 212 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC1.81□□□□□ -2.12
HOXC4P09017 AC025754.2-201ENST00000606491 432 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.81□□□□□ -2.12
HOXC4P09017 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.81□□□□□ -2.12
HOXC4P09017 MIR6128-201ENST00000615528 109 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AL162373.1-201ENST00000620433 407 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
HOXC4P09017 ZNF72P-201ENST00000425869 1908 ntBASIC1.81□□□□□ -2.12
HOXC4P09017 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
HOXC4P09017 Y_RNA.151-201ENST00000363566 112 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RNU6-1059P-201ENST00000363752 98 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RNU4-76P-201ENST00000364509 141 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RNU6-898P-201ENST00000365627 104 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 Y_RNA.384-201ENST00000383909 102 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 MIR518D-201ENST00000385014 87 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 MIR9-3-201ENST00000385084 90 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RNU2-20P-201ENST00000410425 191 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RPS20P15-201ENST00000412792 311 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 SNORD56-201ENST00000413522 71 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 AL627311.1-201ENST00000431514 115 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 NDUFB1P2-201ENST00000449477 176 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 MTCO3P10-201ENST00000455912 772 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 CKS1BP2-201ENST00000497342 240 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 HMGN1P13-201ENST00000505795 138 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 AC116655.1-201ENST00000508324 901 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC1.8□□□□□ -2.12
HOXC4P09017 Y_RNA.687-201ENST00000516558 91 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.8□□□□□ -2.12
HOXC4P09017 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC1.8□□□□□ -2.12
HOXC4P09017 AC079598.5-201ENST00000547460 117 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 LINC00933-203ENST00000559812 219 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 RNU6-91P-201ENST00000607774 107 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 AL160413.1-201ENST00000622780 310 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 AC090574.1-201ENST00000623186 233 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 Z69720.2-201ENST00000624755 279 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.8□□□□□ -2.12
HOXC4P09017 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
HOXC4P09017 RNU6-428P-201ENST00000362942 107 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 Y_RNA.460-201ENST00000384255 102 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 5S_rRNA.2-201ENST00000391293 112 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 AL354751.2-201ENST00000415471 210 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 NCOR1P3-201ENST00000420479 303 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXC4P09017 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXC4P09017 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC1.79□□□□□ -2.12
HOXC4P09017 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXC4P09017 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC1.79□□□□□ -2.12
HOXC4P09017 Y_RNA.635-201ENST00000459041 101 ntBASIC1.79□□□□□ -2.12
HOXC4P09017 AC096745.1-201ENST00000509945 370 ntBASIC1.79□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 114.6 ms