Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 OR51A7-202ENST00000641490 2186 ntAPPRIS P1 BASIC3.73□□□□□ -1.81
HIF3AQ9Y2N7 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
HIF3AQ9Y2N7 OTUD4P1-201ENST00000237841 3067 ntBASIC3.73□□□□□ -1.81
HIF3AQ9Y2N7 LINC01733-201ENST00000449316 4604 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
HIF3AQ9Y2N7 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AC016588.2-201ENST00000632484 3021 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 RNU1-132P-201ENST00000364300 164 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 RNA5SP513-201ENST00000364648 118 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 RNU6-728P-201ENST00000365375 104 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 Y_RNA.368-201ENST00000365547 113 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AL512604.1-201ENST00000404812 257 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 RNA5SP306-201ENST00000411087 107 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 RN7SL385P-201ENST00000468873 276 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 LINC02017-201ENST00000496829 474 ntTSL 3 BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 FCF1P8-201ENST00000510322 597 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AC099522.1-202ENST00000514718 367 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 SNORA72.7-201ENST00000516349 94 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AC027176.1-201ENST00000560204 514 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AC022655.2-201ENST00000577280 318 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 MIR3646-201ENST00000578301 84 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 MIR4724-201ENST00000579485 89 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 MIR5096-201ENST00000583713 70 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AL356218.2-201ENST00000605264 187 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AL773545.4-201ENST00000637262 310 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AL513478.4-201ENST00000641636 310 ntBASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 PCDH15-208ENST00000395432 6901 ntTSL 5 BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.72□□□□□ -1.81
HIF3AQ9Y2N7 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.71□□□□□ -1.81
HIF3AQ9Y2N7 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 TUSC7-203ENST00000477539 2415 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.40-201ENST00000362645 93 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 SNORD114-19-201ENST00000363072 75 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.310-201ENST00000365063 113 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP504-201ENST00000410676 117 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC091390.1-201ENST00000433904 331 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 SNORA71B-202ENST00000439232 272 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 RPS27P1-201ENST00000450552 247 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 SNRPGP3-201ENST00000469405 227 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AP002884.2-201ENST00000471647 395 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 RNU5E-3P-201ENST00000515913 68 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-344P-201ENST00000516635 111 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 RNU7-143P-201ENST00000516781 65 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AL160262.1-201ENST00000522264 254 ntTSL 3 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AL163973.3-201ENST00000547093 430 ntTSL 3 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 EIF4A1P12-201ENST00000551910 141 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 TVP23BP1-201ENST00000557500 617 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC025281.1-201ENST00000567026 265 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 MIR5006-201ENST00000583027 110 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC023043.3-201ENST00000593113 385 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC012493.2-201ENST00000595083 291 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC005562.2-201ENST00000618264 111 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 AC068205.3-201ENST00000636385 468 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 ZNF962P-201ENST00000443465 3140 ntBASIC3.71□□□□□ -1.82
HIF3AQ9Y2N7 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 MAPK10-253ENST00000641010 4072 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AC002546.1-201ENST00000588041 2504 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.243-201ENST00000364481 109 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP509-201ENST00000364577 119 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 SNORA18.2-201ENST00000383865 132 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.393-201ENST00000383936 102 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.456-201ENST00000384232 111 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-1228P-201ENST00000391014 107 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 MIR1183-201ENST00000408856 89 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AL158823.1-201ENST00000418441 478 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AIMP1P2-201ENST00000425294 312 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AL691449.1-201ENST00000426570 421 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AC010099.1-201ENST00000455434 375 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RNU7-23P-201ENST00000459465 62 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RN7SL303P-201ENST00000469773 251 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RN7SL271P-201ENST00000487601 295 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 RPS26P15-201ENST00000488067 348 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AC146944.2-203ENST00000502493 354 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 AC139495.1-202ENST00000513164 354 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 MIR4284-201ENST00000578924 81 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 ZNF616-203ENST00000597013 577 ntTSL 4 BASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 TCL6_2.1-201ENST00000615162 119 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 MIR6758-201ENST00000620653 63 ntBASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC3.7□□□□□ -1.82
HIF3AQ9Y2N7 FRYL-205ENST00000503238 11103 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 AC007256.1-201ENST00000392253 2765 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RAB3C-201ENST00000282878 8896 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 MLF1-203ENST00000392822 2157 ntTSL 5 BASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 SNORA25.7-201ENST00000364375 127 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 Y_RNA.251-201ENST00000364551 99 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNU6-1082P-201ENST00000364574 107 ntBASIC3.69□□□□□ -1.82
HIF3AQ9Y2N7 RNA5SP366-201ENST00000365454 123 ntBASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms