Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC090517.3-201ENST00000625170 141 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 MIR7515-201ENST00000637837 67 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 AC017071.1-201ENST00000564407 2204 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 Z83843.1-201ENST00000604070 3685 ntBASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
TRIM39Q9HCM9 LINC02555-201ENST00000563933 1951 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 RASA1-202ENST00000456692 3776 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.288-201ENST00000364854 92 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 SNORA18.3-201ENST00000384122 132 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 RNU6-793P-201ENST00000384233 104 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.512-201ENST00000384518 102 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 MIR329-1-201ENST00000385028 80 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 TRAV39-201ENST00000390466 331 ntAPPRIS P1 BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 SNORA46.1-201ENST00000391069 153 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 RNU6-130P-201ENST00000411112 103 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC126124.2-201ENST00000413542 321 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC007395.1-201ENST00000451333 677 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC021205.2-201ENST00000480069 347 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC103975.1-201ENST00000482506 483 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC140059.1-201ENST00000489238 361 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC107934.2-201ENST00000518653 310 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 TGIF1P1-201ENST00000558095 802 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 MIR4276-201ENST00000584832 70 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AL133393.1-201ENST00000603277 287 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 RPL17P51-201ENST00000605218 238 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 AC005562.2-201ENST00000618264 111 ntBASIC3.32□□□□□ -1.88
TRIM39Q9HCM9 ATP2C1-202ENST00000359644 3401 ntAPPRIS P3 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 NR3C1-212ENST00000504572 3389 ntAPPRIS ALT1 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 SLC39A10-202ENST00000409086 5432 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 MAPK10-362ENST00000641864 4484 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 ROCK2-203ENST00000401753 4017 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 RNU1-62P-201ENST00000362599 164 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.64-201ENST00000362845 102 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 RNA5SP197-201ENST00000363357 119 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 SNORD46.1-201ENST00000364139 104 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 RNU6-1145P-201ENST00000384246 107 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 RNVU1-14-201ENST00000384770 164 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AL079342.1-201ENST00000401460 267 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC096920.1-201ENST00000423991 241 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 LINC01399-202ENST00000458450 244 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC091179.1-201ENST00000461606 579 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC025465.3-201ENST00000510570 311 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 SCARNA3-201ENST00000517097 143 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 HSPE1P18-201ENST00000517602 280 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC023824.2-201ENST00000566185 400 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC078899.3-201ENST00000599065 212 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 AC011476.5-201ENST00000615594 130 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.31□□□□□ -1.88
TRIM39Q9HCM9 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.143-201ENST00000363520 106 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 RNA5SP293-201ENST00000410527 113 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 RPS12P18-201ENST00000442381 270 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 AC010095.1-201ENST00000443543 144 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 AC091153.1-201ENST00000466297 402 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 RN7SL601P-201ENST00000471221 293 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 TCL6_2.1-201ENST00000615162 119 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 AC018692.3-201ENST00000623929 123 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 MTND5P35-201ENST00000557537 1720 ntBASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 DNAH12-208ENST00000495027 12146 ntAPPRIS P1 TSL 5 BASIC3.3□□□□□ -1.88
TRIM39Q9HCM9 AL079305.1-201ENST00000623159 3008 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 MIR30E-201ENST00000362104 92 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.222-201ENST00000364264 102 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 SNORA68.1-201ENST00000364537 132 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AP002088.1-201ENST00000382740 395 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 U6atac.2-201ENST00000408644 118 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 RNA5SP120-201ENST00000410900 112 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 UQCRBP2-201ENST00000447827 297 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AC010401.1-201ENST00000463867 348 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 CENPBD1P1-201ENST00000464061 469 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AC074133.1-201ENST00000515696 183 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AC107871.2-201ENST00000612894 502 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 SMAD5-AS1_2.1-201ENST00000617906 131 ntBASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC3.29□□□□□ -1.88
TRIM39Q9HCM9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 RNU1-75P-201ENST00000347264 129 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 SNORD21-201ENST00000383953 95 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 Y_RNA.462-201ENST00000384268 102 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 RNU6-505P-201ENST00000384427 107 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 SNORD115-46-201ENST00000390982 71 ntBASIC3.28□□□□□ -1.88
TRIM39Q9HCM9 RNU5A-5P-201ENST00000411054 116 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms