Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 CENPF-206ENST00000614578 528 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AL109809.4-201ENST00000603520 2185 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC091152.2-201ENST00000591628 2569 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 ZNF626-204ENST00000612591 4404 ntAPPRIS P1 TSL 5 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC073325.2-201ENST00000339545 159 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.288-201ENST00000364854 92 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.307-201ENST00000365022 117 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-281P-201ENST00000384212 103 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 MIR1302-6-201ENST00000408466 90 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 LINC01402-201ENST00000422226 279 ntTSL 3 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 ARF4P2-201ENST00000430209 526 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AL121594.1-201ENST00000475906 575 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AL049830.2-201ENST00000480072 201 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 RPL23AP70-201ENST00000483361 460 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 RN7SL283P-201ENST00000489055 303 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 MRPS36P2-201ENST00000512569 299 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-408P-201ENST00000515910 100 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 SNORA70.24-201ENST00000517233 118 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AP002992.1-202ENST00000530842 551 ntTSL 2 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC023157.2-201ENST00000540596 141 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC079598.5-201ENST00000547460 117 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 MIR5047-201ENST00000579212 100 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 MIR4300-201ENST00000581016 96 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AL161756.2-201ENST00000604597 246 ntBASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AK9-203ENST00000368948 2478 ntTSL 5 BASIC3.31□□□□□ -1.88
PCIF1Q9H4Z3 AC000403.1-201ENST00000613696 3585 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 CCDC66-201ENST00000326595 3027 ntAPPRIS P3 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 MIR422A-201ENST00000362286 90 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.143-201ENST00000363520 106 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-799P-201ENST00000363567 107 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-873P-201ENST00000363833 107 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 SNORA71.1-201ENST00000364523 117 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RNU1-57P-201ENST00000384491 166 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 SNORA46-201ENST00000384762 135 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RNU1-101P-201ENST00000391171 127 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 U3.26-201ENST00000391236 204 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 MIR208B-201ENST00000401172 77 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 CBX3P9-201ENST00000402326 552 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 SNORD12B-201ENST00000410433 91 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RN7SKP220-201ENST00000410611 288 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RN7SL330P-201ENST00000469709 307 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AC098869.1-201ENST00000481627 292 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RPL36AP48-201ENST00000485521 314 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RNA5SP341-201ENST00000516261 117 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 RN7SKP49-201ENST00000516675 260 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AC068657.1-201ENST00000520807 306 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.772-201ENST00000606692 102 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AC090425.1-201ENST00000610007 140 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AC005520.5-201ENST00000613926 164 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 MIR376A1-201ENST00000616574 68 ntBASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC3.3□□□□□ -1.88
PCIF1Q9H4Z3 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 RNU4-56P-201ENST00000364700 142 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 CD24P4-201ENST00000382840 243 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 MIR215-201ENST00000384858 110 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 MRPL35P1-201ENST00000404272 572 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 RNU2-38P-201ENST00000410856 79 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 Z98742.2-201ENST00000431564 187 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 RAC1P5-201ENST00000512182 576 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 SCARNA17.1-201ENST00000516211 143 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 RNU2-53P-201ENST00000516257 147 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 SCARNA17.2-201ENST00000516334 143 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1198P-201ENST00000516904 67 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.713-201ENST00000517013 96 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 LINC02253-201ENST00000559321 448 ntTSL 2 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 SCARNA17.4-201ENST00000614296 143 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 AL162274.2-201ENST00000614406 332 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 UCA1.1-201ENST00000620952 75 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 AC091564.4-201ENST00000533934 2194 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 ZNF204P-201ENST00000416749 2397 ntBASIC3.29□□□□□ -1.88
PCIF1Q9H4Z3 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 AL355596.1-201ENST00000565399 3996 ntBASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
PCIF1Q9H4Z3 RNU4-15P-201ENST00000362613 141 ntBASIC3.28□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 141.7 ms