Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 U6.105-201ENST00000637379 88 ntBASIC4.04□□□□□ -1.76
TRAIPQ9BWF2 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.04□□□□□ -1.76
TRAIPQ9BWF2 MMS22L-202ENST00000369251 3949 ntTSL 2 BASIC4.04□□□□□ -1.76
TRAIPQ9BWF2 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.04□□□□□ -1.76
TRAIPQ9BWF2 CEP170P1-201ENST00000502249 4587 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 AP006437.1-201ENST00000641440 3685 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 Y_RNA.64-201ENST00000362845 102 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 Y_RNA.230-201ENST00000364348 109 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 RNU6-1305P-201ENST00000364353 104 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 RNU6-702P-201ENST00000364982 107 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 Y_RNA.452-201ENST00000384202 108 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 MIR95-201ENST00000385072 81 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 MIR34B-201ENST00000385076 84 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 AL357139.1-201ENST00000407792 426 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 RN7SL293P-201ENST00000481765 281 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 DEFB131C-201ENST00000528817 165 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 AC004817.2-201ENST00000561794 651 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 MIR4503-201ENST00000582187 83 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 MIR8062-201ENST00000621515 85 ntBASIC4.03□□□□□ -1.76
TRAIPQ9BWF2 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.77
TRAIPQ9BWF2 FAM35CP-201ENST00000554755 2470 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 RNF38-210ENST00000611646 5185 ntTSL 5 BASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 Y_RNA.415-201ENST00000384012 112 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 RNU6-20P-201ENST00000384106 107 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 RNU6-21P-201ENST00000384710 107 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 UBBP3-201ENST00000445497 241 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 LINC01399-202ENST00000458450 244 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 MIR3922-201ENST00000585192 84 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 BRDTP1-201ENST00000605735 677 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 AC011373.1-201ENST00000607270 237 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 MIR7975-201ENST00000619350 68 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 AC012314.7-201ENST00000619693 93 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 AP000553.6-201ENST00000641242 118 ntBASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.02□□□□□ -1.77
TRAIPQ9BWF2 TDRD1-202ENST00000369280 4062 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 RNU1-75P-201ENST00000347264 129 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 SNORD56.5-201ENST00000364281 72 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 Y_RNA.401-201ENST00000383965 117 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 RNU6-937P-201ENST00000384325 106 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 Y_RNA.512-201ENST00000384518 102 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 MIR568-201ENST00000385036 95 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AC003685.2-201ENST00000422795 395 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AC005002.2-201ENST00000438228 269 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 TRBV25OR9-2-201ENST00000438417 374 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 RNU7-110P-201ENST00000516891 62 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AC109329.2-201ENST00000519658 482 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 LINC02386-203ENST00000552182 501 ntTSL 3 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 MYL12BP1-201ENST00000569826 507 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AC078899.3-201ENST00000599065 212 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 AL357075.2-201ENST00000614906 189 ntBASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
TRAIPQ9BWF2 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
TRAIPQ9BWF2 RNA5SP72-201ENST00000364442 117 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 SNORD63-201ENST00000384262 68 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 Y_RNA.461-201ENST00000384263 103 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 MIR218-2-201ENST00000385006 110 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 RNU2-20P-201ENST00000410425 191 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 AC093382.1-201ENST00000413311 379 ntTSL 5 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 ARL5AP4-201ENST00000430731 512 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 RPL7P49-201ENST00000471402 708 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 SRIP1-201ENST00000489235 288 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 RNA5SP208-201ENST00000516156 78 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 MIR4300-201ENST00000581016 96 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 AC007179.3-201ENST00000604976 235 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC4□□□□□ -1.77
TRAIPQ9BWF2 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
TRAIPQ9BWF2 IDE-202ENST00000371581 4480 ntTSL 2 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC4□□□□□ -1.77
TRAIPQ9BWF2 PSMA5-201ENST00000271308 3729 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 SNORD9-201ENST00000362566 104 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 RNU6-743P-201ENST00000364151 106 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 RNA5SP125-201ENST00000364843 120 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 RNU6-1264P-201ENST00000383891 107 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 RPL23AP36-201ENST00000413895 458 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 RAB28P5-201ENST00000427490 651 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 Z75741.1-201ENST00000446793 314 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 TRBV12-2-201ENST00000489763 344 ntBASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC3.99□□□□□ -1.77
TRAIPQ9BWF2 SEPT14P8-201ENST00000508026 178 ntBASIC3.99□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 108.2 ms