Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 AC022616.8-201ENST00000533569 253 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC093023.1-201ENST00000547375 507 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AL442163.3-201ENST00000554110 156 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 MIR5188-201ENST00000583467 113 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 U4atac.1-201ENST00000618345 95 ntBASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
CCDC28AQ8IWP9 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 RNA5SP124-201ENST00000362739 110 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.158-201ENST00000363651 101 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-879P-201ENST00000364328 108 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 RNU1-138P-201ENST00000384093 164 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-281P-201ENST00000384212 103 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 SNORA57.1-201ENST00000391227 145 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 MTCO3P8-201ENST00000453691 755 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC104619.4-201ENST00000510773 249 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC108043.1-201ENST00000512696 574 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 DEFB131C-201ENST00000528817 165 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 CBX3P7-201ENST00000532876 502 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC136475.4-201ENST00000534271 280 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 ANP32BP3-201ENST00000559213 706 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC006504.6-201ENST00000590142 199 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC125232.2-201ENST00000592457 143 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC022432.1-201ENST00000595739 310 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AL020997.2-201ENST00000602607 184 ntBASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 TSGA10-205ENST00000410001 3036 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 PRKAA2-201ENST00000371244 9347 ntAPPRIS P2 TSL 1 (best) BASIC2.62□□□□□ -1.99
CCDC28AQ8IWP9 ZNF271P-202ENST00000465539 1970 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 MTND4P1-201ENST00000457501 1466 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU1-62P-201ENST00000362599 164 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU1-76P-201ENST00000362903 159 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNA5SP393-201ENST00000363423 117 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-234P-201ENST00000365229 104 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.424-201ENST00000384063 103 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 SNORA18.3-201ENST00000384122 132 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.485-201ENST00000384395 102 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 MIR1193-201ENST00000408109 78 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU6ATAC-201ENST00000408749 126 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RN7SKP202-201ENST00000410439 330 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 CYCSP4-201ENST00000429682 331 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 ARL5AP4-201ENST00000430731 512 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC009237.7-201ENST00000447357 229 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RPS23P5-201ENST00000495419 428 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU5F-4P-201ENST00000516581 114 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RPPH1-2P-201ENST00000516688 293 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RNU2-44P-201ENST00000516795 194 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AP002770.2-201ENST00000543613 532 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC009803.1-201ENST00000551531 416 ntTSL 3 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 MIR3160-1-201ENST00000577972 85 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 RN7SL703P-201ENST00000578485 302 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 MIR5006-201ENST00000583027 110 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC010999.1-201ENST00000611856 324 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 ZNF72P-201ENST00000425869 1908 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC091812.1-201ENST00000432235 1948 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 AC135776.4-201ENST00000624300 1904 ntBASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
CCDC28AQ8IWP9 UHMK1-204ENST00000545294 8117 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AL355596.1-201ENST00000565399 3996 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.27-201ENST00000362540 103 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-1301P-201ENST00000362724 104 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 SNORD14.1-201ENST00000365609 90 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 DEFA7P-201ENST00000382676 285 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-793P-201ENST00000384233 104 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNY3P4-201ENST00000384428 101 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 MIR592-201ENST00000384959 97 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-1001P-201ENST00000411265 100 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 CYCSP19-201ENST00000411715 316 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AL035423.1-201ENST00000420331 213 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNU7-26P-201ENST00000458980 63 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AC093852.1-201ENST00000503587 266 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AC026402.1-201ENST00000513642 170 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 MIR449C-201ENST00000516047 92 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 RNU6-965P-201ENST00000516721 96 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 Y_RNA.721-201ENST00000517207 102 ntBASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 NOC3L-201ENST00000371361 3455 ntAPPRIS P1 TSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
CCDC28AQ8IWP9 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms