Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 RN7SKP156-201ENST00000410308 342 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 HSPE1P12-201ENST00000412576 301 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RPL23AP46-201ENST00000438548 490 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 HSPE1P13-201ENST00000451143 297 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RPS29P24-201ENST00000486345 171 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RPS29P20-201ENST00000489592 171 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 LINC01969-201ENST00000514468 455 ntTSL 3 BASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RNU6-772P-201ENST00000516042 105 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RNU1-95P-201ENST00000516357 160 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 RNU1-128P-201ENST00000516704 160 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 Y_RNA.757-201ENST00000578934 114 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 MIR3121-201ENST00000579680 77 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 TCL6_2.1-201ENST00000615162 119 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 AC018692.3-201ENST00000623929 123 ntBASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 MAP3K19-203ENST00000375845 4369 ntAPPRIS P3 TSL 1 (best) BASIC4.57□□□□□ -1.68
SH3RF1Q7Z6J0 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 ZNF382-203ENST00000435416 3865 ntAPPRIS ALT1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC024940.1-206ENST00000632817 4299 ntAPPRIS P5 TSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 RNU6-235P-201ENST00000362644 107 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 SNORA1.3-201ENST00000384676 136 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AL714022.1-201ENST00000439897 151 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC004386.2-201ENST00000441858 148 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC078918.1-201ENST00000498515 228 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC090142.3-201ENST00000519012 385 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 MIR5006-201ENST00000583027 110 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 MIR5684-201ENST00000585074 65 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 IL33-203ENST00000456383 2501 ntTSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC004944.1-201ENST00000517807 3059 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC000123.3-201ENST00000624029 4975 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 AC087190.4-201ENST00000574616 8334 ntBASIC4.56□□□□□ -1.68
SH3RF1Q7Z6J0 OR6P1-202ENST00000641540 3255 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 UBE3A-202ENST00000397954 2873 ntTSL 5 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 ZNF92-204ENST00000450302 2957 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 SNORA5A-201ENST00000384111 134 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 MIR34B-201ENST00000385076 84 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 AC027124.2-201ENST00000428249 105 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 AP000873.1-201ENST00000463987 400 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 RNA5SP468-201ENST00000516782 93 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 AC011602.1-201ENST00000546484 331 ntBASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 PMS1-215ENST00000447232 2576 ntTSL 2 BASIC4.55□□□□□ -1.68
SH3RF1Q7Z6J0 C12orf4-201ENST00000261250 3826 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AC008555.8-201ENST00000623602 2168 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 RNU6-600P-201ENST00000362524 99 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 Y_RNA.310-201ENST00000365063 113 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 MIR607-201ENST00000385241 96 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 RNY4P29-201ENST00000410801 97 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 SNORA57.3-201ENST00000411095 141 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 SNORA59A-201ENST00000459326 152 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 RN7SL271P-201ENST00000487601 295 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AC092666.1-201ENST00000492054 573 ntTSL 4 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 SNORD33.1-201ENST00000516213 88 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 RNU6-561P-201ENST00000516222 102 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 Y_RNA.677-201ENST00000516401 85 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AL670379.3-201ENST00000605040 251 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 PCGEM1.1-201ENST00000613431 131 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 LMBR1-222ENST00000638959 93 ntTSL 5 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AL133412.1-201ENST00000380194 2992 ntBASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 PIKFYVE-201ENST00000264380 9901 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SH3RF1Q7Z6J0 AC073346.2-201ENST00000624724 2058 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 FAM111B-202ENST00000411426 3344 ntTSL 4 BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 AGTR2-201ENST00000371906 2882 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 Y_RNA.294-201ENST00000364916 102 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 RNA5SP189-201ENST00000364920 115 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 Y_RNA.388-201ENST00000383919 113 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 SNORA79-201ENST00000408376 140 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 RN7SKP177-201ENST00000410567 355 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 HMGN2P31-201ENST00000432430 273 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 VDAC1P3-201ENST00000434069 851 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 AL451129.1-201ENST00000437471 285 ntTSL 3 BASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 HSPE1P21-201ENST00000438283 308 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 AC005921.1-201ENST00000510589 286 ntBASIC4.53□□□□□ -1.68
SH3RF1Q7Z6J0 RNU6-638P-201ENST00000516582 104 ntBASIC4.53□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 105 ms