Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 SCARNA4-202ENST00000625402 129 ntBASIC3.61□□□□□ -1.83
CNKSR3Q6P9H4 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC3.61□□□□□ -1.83
CNKSR3Q6P9H4 AL365361.1-201ENST00000566942 3481 ntBASIC3.61□□□□□ -1.83
CNKSR3Q6P9H4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC3.61□□□□□ -1.83
CNKSR3Q6P9H4 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL359693.1-201ENST00000614959 2407 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 RNU6-653P-201ENST00000363074 106 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 Z98749.2-208ENST00000381646 500 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 SNORA44-201ENST00000384584 132 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 MIR186-201ENST00000384988 86 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 SNORA46.1-201ENST00000391069 153 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL138878.1-201ENST00000405131 347 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 RNU2-68P-201ENST00000410878 191 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL138962.1-201ENST00000417987 411 ntTSL 5 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL162725.1-201ENST00000435405 301 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 POLR2KP2-201ENST00000438155 177 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 IFNA11P-201ENST00000446352 526 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 RN7SL863P-201ENST00000462370 296 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 SNORA40.9-201ENST00000515895 93 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 RNU6-966P-201ENST00000516479 104 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 CYCSP39-201ENST00000565821 309 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 SNORA43.4-201ENST00000629559 138 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 AC068647.1-201ENST00000489539 2265 ntBASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 EMSY-210ENST00000529032 6848 ntAPPRIS P3 TSL 1 (best) BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC3.6□□□□□ -1.83
CNKSR3Q6P9H4 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 ZNF266-204ENST00000590306 3317 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 IQGAP2-202ENST00000379730 5442 ntTSL 5 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 WNK3-205ENST00000620763 5400 ntTSL 5 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 RNU5B-2P-201ENST00000363036 113 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 RNU6-527P-201ENST00000363425 104 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 Y_RNA.230-201ENST00000364348 109 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 Y_RNA.331-201ENST00000365267 102 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC024067.1-201ENST00000426199 223 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 TEX41-209ENST00000451478 452 ntTSL 2 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC011602.1-201ENST00000546484 331 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC055872.1-201ENST00000570978 278 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC024153.1-201ENST00000603103 365 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC136601.2-201ENST00000604356 474 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 MIR7106-201ENST00000612419 65 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 RNVU1-4-201ENST00000612985 164 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 AC006001.4-201ENST00000622243 395 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 MTND1P7-201ENST00000632801 297 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 U6.98-201ENST00000637157 84 ntBASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC3.59□□□□□ -1.83
CNKSR3Q6P9H4 ADAT2-203ENST00000606514 6651 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CNKSR3Q6P9H4 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.59□□□□□ -1.84
CNKSR3Q6P9H4 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-942P-201ENST00000363002 107 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 Y_RNA.262-201ENST00000364641 102 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU4-56P-201ENST00000364700 142 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 SNORD32A-201ENST00000364805 84 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-818P-201ENST00000364837 108 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 Y_RNA.319-201ENST00000365138 92 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 Y_RNA.343-201ENST00000365354 112 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-217P-201ENST00000384164 104 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-541P-201ENST00000384709 110 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-417P-201ENST00000384712 107 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RNU6-159P-201ENST00000391080 106 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 Y_RNA.586-201ENST00000391146 98 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 U3.37-201ENST00000408528 213 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AL390729.2-201ENST00000416137 156 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 EIF1AXP1-201ENST00000419267 435 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AL353705.1-201ENST00000433468 480 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 HMGN2P20-201ENST00000437531 273 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AC107083.1-201ENST00000439643 279 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AL357552.1-201ENST00000445254 415 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 RPS26P15-201ENST00000488067 348 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 HMGB3P3-201ENST00000510526 400 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 HSPE1P7-201ENST00000604681 321 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AL357075.2-201ENST00000614906 189 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 AC091895.1-201ENST00000624494 256 ntBASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.58□□□□□ -1.84
CNKSR3Q6P9H4 FKTN-209ENST00000602661 2576 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
CNKSR3Q6P9H4 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CNKSR3Q6P9H4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 103.5 ms