Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 VN1R80P-201ENST00000597126 338 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 AC009509.4-201ENST00000619202 509 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 SNORA43.4-201ENST00000629559 138 ntBASIC1.44□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.381-201ENST00000365666 102 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 SNORA36A-201ENST00000384221 132 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 RNU6-378P-201ENST00000384324 107 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 SNORD73A-201ENST00000386062 65 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 RNU6-1106P-201ENST00000390845 107 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AF228730.1-201ENST00000397972 663 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 MIR1323-201ENST00000408090 73 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 RNU2-41P-201ENST00000410991 178 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 CDK8P2-201ENST00000415020 547 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AL121601.2-201ENST00000438019 707 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AC007547.1-201ENST00000462177 490 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AC130509.1-201ENST00000464158 433 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AC091133.4-201ENST00000511142 308 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 SNORA40.12-201ENST00000516329 111 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 MIR4285-201ENST00000581001 85 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 AC005520.5-201ENST00000613926 164 ntBASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.43□□□□□ -2.18
TRIM40Q6P9F5 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 MIR340-201ENST00000362125 95 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 MIR126-201ENST00000362291 85 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.140-201ENST00000363474 103 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 RNU6-438P-201ENST00000365561 103 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 SNORA32.2-201ENST00000384049 122 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 MIR320A-201ENST00000385302 82 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.582-201ENST00000391023 95 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 RNU4-55P-201ENST00000410731 137 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AL606489.2-201ENST00000433886 234 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 RPL31P3-201ENST00000458430 332 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC079140.3-201ENST00000511111 550 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC008834.1-201ENST00000511612 175 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 RNU6-1098P-201ENST00000516772 96 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC006362.1-201ENST00000567392 174 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 MIR3198-2-201ENST00000577868 80 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC009994.1-201ENST00000606889 253 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AL136221.1-201ENST00000621449 509 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC022513.1-201ENST00000624512 117 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC090582.1-201ENST00000636321 199 ntBASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.42□□□□□ -2.18
TRIM40Q6P9F5 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RNU6-60P-201ENST00000364792 103 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 Y_RNA.359-201ENST00000365498 102 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 NCOR1P3-201ENST00000420479 303 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC139712.2-201ENST00000424302 339 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC108667.1-201ENST00000428618 249 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 MTATP6P17-201ENST00000431030 672 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 SNRPEP8-201ENST00000442866 260 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 TOMM22P6-201ENST00000465035 409 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 MTCO3P38-201ENST00000468910 766 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RNU6-189P-201ENST00000516120 101 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RNA5SP458-201ENST00000516188 119 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RNU5F-4P-201ENST00000516581 114 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC015720.1-201ENST00000565251 277 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 SUB1P4-201ENST00000566062 339 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AC099850.3-201ENST00000577678 321 ntTSL 3 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 MIR4303-201ENST00000581299 66 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AP000942.3-201ENST00000603702 160 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RPL17P51-201ENST00000605218 238 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 MTND5P9-201ENST00000503854 1755 ntBASIC1.41□□□□□ -2.18
TRIM40Q6P9F5 RNU1-76P-201ENST00000362903 159 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 RNU6-82P-201ENST00000363970 107 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 RNU1-42P-201ENST00000364033 160 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 SNORD31B-201ENST00000364977 69 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 U8.10-201ENST00000384260 133 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 SNORA12.2-201ENST00000391040 156 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 MIR208B-201ENST00000401172 77 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AC012306.1-201ENST00000423267 114 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 MTCO3P46-201ENST00000425787 232 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AL354695.1-201ENST00000427935 228 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 MTCO2P16-201ENST00000436962 677 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 AC098826.2-201ENST00000452011 651 ntBASIC1.4□□□□□ -2.19
TRIM40Q6P9F5 TPTE2P5-203ENST00000458118 728 ntBASIC1.4□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 115.1 ms