Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 Y_RNA.106-201ENST00000363189 100 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 DYNLT3P1-201ENST00000378574 347 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-378P-201ENST00000384324 107 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 MIR95-201ENST00000385072 81 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 MIR181B1-201ENST00000385240 110 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 AC244505.4-201ENST00000434905 287 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 SSXP5-201ENST00000443473 287 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 UBBP3-201ENST00000445497 241 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 AC132942.1-201ENST00000486753 483 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-56P-201ENST00000516986 93 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.711-201ENST00000516993 102 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-58P-201ENST00000517143 103 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 RN7SKP295-201ENST00000517264 153 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 AC109329.2-201ENST00000519658 482 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 AC090617.3-201ENST00000573670 475 ntBASIC3.51□□□□□ -1.85
CCDC144BQ3MJ40 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC000403.1-201ENST00000613696 3585 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-280P-201ENST00000364145 104 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 EEF1A1P41-201ENST00000414667 207 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC114482.1-201ENST00000418010 247 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 MRPS18CP6-201ENST00000423587 223 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 USP9YP16-201ENST00000430287 407 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 USP9YP23-201ENST00000455085 407 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RNU7-87P-201ENST00000459343 62 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC090515.1-201ENST00000465295 476 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AL163540.1-201ENST00000485382 386 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC091826.1-201ENST00000514065 313 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 SNORA25.10-201ENST00000515926 124 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-911P-201ENST00000516523 104 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RN7SKP40-201ENST00000517211 242 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 HSPE1P18-201ENST00000517602 280 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 GNAI2P1-201ENST00000541815 315 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RPL12P50-201ENST00000603116 116 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC092447.9-201ENST00000603395 144 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 AC006157.1-201ENST00000611750 366 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 Z82209.1-201ENST00000422141 2135 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 BX322639.1-202ENST00000423987 2213 ntBASIC3.5□□□□□ -1.85
CCDC144BQ3MJ40 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 SNORD56.5-201ENST00000364281 72 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 SNORD67-201ENST00000390833 111 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.597-201ENST00000410463 100 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC003685.2-201ENST00000422795 395 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 PMCHL1-202ENST00000423102 261 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC083906.5-201ENST00000503722 328 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-1114P-201ENST00000516022 107 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 ELOCP31-201ENST00000540463 467 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC018630.3-201ENST00000542637 96 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC027288.2-201ENST00000553028 243 ntBASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.49□□□□□ -1.85
CCDC144BQ3MJ40 MTND5P16-201ENST00000460269 1703 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 MIR22-201ENST00000362190 85 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-245P-201ENST00000384020 107 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.422-201ENST00000384054 114 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RNY1P14-201ENST00000384426 108 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-1274P-201ENST00000384557 107 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RNU1-139P-201ENST00000391307 165 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AL590004.1-201ENST00000405321 300 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 MIR1294-201ENST00000408503 142 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.592-201ENST00000410274 109 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 MCFD2P1-201ENST00000417812 300 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AC022018.1-201ENST00000430685 241 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AL139132.1-201ENST00000431587 344 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RPS29P26-201ENST00000477483 171 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-475P-201ENST00000516073 104 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 SNORA48.11-201ENST00000517015 89 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AC090616.3-201ENST00000582184 217 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AL355297.2-201ENST00000604792 129 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 AC087588.2-201ENST00000617667 426 ntBASIC3.48□□□□□ -1.85
CCDC144BQ3MJ40 SNORD32B-201ENST00000364460 84 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 RNU4-42P-201ENST00000364738 142 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-1032P-201ENST00000384100 107 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.496-201ENST00000384444 101 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 MIR628-201ENST00000385229 95 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 RNU6-159P-201ENST00000391080 106 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 MTCO3P19-201ENST00000415864 321 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 MTND4P19-201ENST00000446659 478 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 AP004217.1-201ENST00000480579 346 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 VN1R91P-201ENST00000594377 169 ntBASIC3.47□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.812-201ENST00000610788 101 ntBASIC3.47□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms