Protein–RNA interactions for Protein: Q15858

SCN9A, Sodium channel protein type 9 subunit alpha, humanhuman

Predictions only

Length 1,988 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9AQ15858 AL391834.2-201ENST00000609982 546 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AC092268.1-201ENST00000342691 405 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 RNU6-39P-201ENST00000384344 107 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 MIR194-1-201ENST00000384892 85 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC005534.2-201ENST00000431047 433 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 WDR78-207ENST00000488333 613 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 CCDC39-AS1-201ENST00000495357 283 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 MTND3P5-201ENST00000512798 333 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC105417.1-201ENST00000514691 285 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 RNU6-1146P-201ENST00000516282 102 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AP003034.1-201ENST00000534621 422 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AC023050.3-201ENST00000541142 333 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.81□□□□□ -2.28
SCN9AQ15858 AC104073.3-201ENST00000610942 955 ntBASIC0.81□□□□□ -2.28
SCN9AQ15858 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.81□□□□□ -2.28
SCN9AQ15858 RNU6-271P-201ENST00000363858 105 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 Y_RNA.258-201ENST00000364613 105 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
SCN9AQ15858 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN9AQ15858 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC0.8□□□□□ -2.28
SCN9AQ15858 SNAP23P1-201ENST00000433229 246 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC002486.1-201ENST00000435098 391 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
SCN9AQ15858 RPL26P26-201ENST00000480251 434 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN9AQ15858 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN9AQ15858 SNORA3.4-201ENST00000515969 96 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 RNVU1-2-201ENST00000516326 135 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC004812.1-201ENST00000540773 146 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.8□□□□□ -2.28
SCN9AQ15858 AL365434.2-201ENST00000607979 234 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC009229.3-201ENST00000608056 282 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC005520.5-201ENST00000613926 164 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC104010.1-201ENST00000616889 150 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 AC008133.2-201ENST00000624540 351 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 MTND5P17-201ENST00000418405 1603 ntBASIC0.8□□□□□ -2.28
SCN9AQ15858 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.79□□□□□ -2.28
SCN9AQ15858 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
SCN9AQ15858 RNU6-190P-201ENST00000384154 102 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MIR520A-201ENST00000384862 85 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MIR193B-201ENST00000384907 83 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MTCYBP2-201ENST00000407745 171 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC0.79□□□□□ -2.28
SCN9AQ15858 AC079781.2-201ENST00000446424 169 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AC004054.1-201ENST00000515111 270 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN9AQ15858 Y_RNA.672-201ENST00000516289 104 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 SUMO2P18-201ENST00000518873 252 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN9AQ15858 MTND1P8-201ENST00000571424 950 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AL034555.1-201ENST00000604816 211 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MTND4P4-201ENST00000439033 1366 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 MTND4P9-201ENST00000507819 1346 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RNU1-124P-201ENST00000363861 145 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RNU6-939P-201ENST00000384634 107 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 SNORA48.1-201ENST00000390879 135 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 SNORA26.3-201ENST00000391119 136 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RPL37P10-201ENST00000412884 288 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 SSR1P2-201ENST00000415208 787 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AL008987.1-201ENST00000415528 237 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
SCN9AQ15858 ARL5AP1-201ENST00000418991 388 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 Z99497.1-201ENST00000421282 135 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RPS26P55-201ENST00000471178 356 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RNA5SP330-201ENST00000517096 96 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AP003484.1-201ENST00000530974 250 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AC090503.1-201ENST00000548029 729 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN9AQ15858 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC0.79□□□□□ -2.28
SCN9AQ15858 CYP4A27P-201ENST00000567218 190 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 HSPE1P19-201ENST00000603327 295 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AC007742.2-201ENST00000618226 398 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AC022513.1-201ENST00000624512 117 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.79□□□□□ -2.28
SCN9AQ15858 U6.114-201ENST00000636407 96 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 AC121333.1-201ENST00000567488 2709 ntBASIC0.79□□□□□ -2.28
SCN9AQ15858 RNU6-179P-201ENST00000363350 107 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 RNU6-716P-201ENST00000365621 103 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 SNORA24.1-201ENST00000384401 135 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 AC123900.1-201ENST00000420390 96 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 AC132479.1-201ENST00000449160 144 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.78□□□□□ -2.28
SCN9AQ15858 SNORD42A-201ENST00000459584 64 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 AC007547.1-201ENST00000462177 490 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 UBL5P1-201ENST00000507979 193 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 RNU6-123P-201ENST00000516163 102 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 Vault.3-201ENST00000516676 95 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 ZNF321P-202ENST00000550843 495 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 MIR3682-201ENST00000581338 84 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 AC104458.1-201ENST00000608243 463 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 AC136475.10-201ENST00000620253 385 ntBASIC0.78□□□□□ -2.28
SCN9AQ15858 RNU6-1287P-201ENST00000362914 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 SNORD31B-201ENST00000364977 69 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-378P-201ENST00000384324 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-434P-201ENST00000384376 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-1235P-201ENST00000384559 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 RNU6-1060P-201ENST00000384664 107 ntBASIC0.77□□□□□ -2.29
SCN9AQ15858 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 102.3 ms