Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA1P55317 HSPE1P4-201ENST00000550617 308 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA1P55317 AC109446.1-201ENST00000566172 220 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC1.08□□□□□ -2.24
FOXA1P55317 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.08□□□□□ -2.24
FOXA1P55317 AC012507.3-201ENST00000603556 477 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.08□□□□□ -2.24
FOXA1P55317 AL353770.2-201ENST00000620024 78 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 AC120349.3-201ENST00000624377 529 ntBASIC1.08□□□□□ -2.24
FOXA1P55317 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
FOXA1P55317 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.08□□□□□ -2.24
FOXA1P55317 RNU6-552P-201ENST00000362869 119 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 Y_RNA.269-201ENST00000364685 89 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 RNU4-56P-201ENST00000364700 142 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 Y_RNA.332-201ENST00000365271 113 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 Y_RNA.508-201ENST00000384502 114 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.07□□□□□ -2.24
FOXA1P55317 RNU6-903P-201ENST00000391270 109 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 RNA5SP201-201ENST00000410316 124 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 RN7SKP61-201ENST00000410642 295 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 RN7SKP142-201ENST00000411236 328 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC1.07□□□□□ -2.24
FOXA1P55317 AC078809.1-201ENST00000427601 140 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 RPS27AP8-201ENST00000452665 445 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC112492.4-201ENST00000456549 352 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 SNRPFP3-201ENST00000457792 225 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.07□□□□□ -2.24
FOXA1P55317 TOMM22P6-201ENST00000465035 409 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC114801.2-201ENST00000503825 781 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC1.07□□□□□ -2.24
FOXA1P55317 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.07□□□□□ -2.24
FOXA1P55317 AK3P2-201ENST00000507976 429 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC1.07□□□□□ -2.24
FOXA1P55317 AC105417.1-201ENST00000514691 285 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.07□□□□□ -2.24
FOXA1P55317 AL391840.1-201ENST00000571144 367 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 MIR5583-1-201ENST00000580941 59 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC068790.2-201ENST00000602601 557 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC078795.3-201ENST00000602913 472 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC010900.2-201ENST00000604508 210 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC008536.2-201ENST00000607284 349 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AP001596.2-201ENST00000608410 312 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 AC063944.3-201ENST00000609969 533 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
FOXA1P55317 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.07□□□□□ -2.24
FOXA1P55317 LINC02555-201ENST00000563933 1951 ntBASIC1.07□□□□□ -2.24
FOXA1P55317 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC1.06□□□□□ -2.24
FOXA1P55317 RNU6-1120P-201ENST00000362988 108 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 Y_RNA.159-201ENST00000363674 87 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 Y_RNA.399-201ENST00000383955 105 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 RNU6-348P-201ENST00000384386 107 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 MIR513A1-201ENST00000385138 129 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AL049545.1-201ENST00000401856 572 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.06□□□□□ -2.24
FOXA1P55317 MTATP6P18-201ENST00000417994 673 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 RPL30P13-201ENST00000418873 348 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC1.06□□□□□ -2.24
FOXA1P55317 NCOR1P3-201ENST00000420479 303 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC092447.3-201ENST00000426027 686 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 RPL23AP95-201ENST00000426806 265 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 CETN4P-201ENST00000432407 469 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AL356010.1-201ENST00000456364 102 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC130509.1-201ENST00000464158 433 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC079140.5-201ENST00000507882 310 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 ATP5EP1-201ENST00000510257 156 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC005741.1-201ENST00000511094 432 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC091874.1-201ENST00000511402 339 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.06□□□□□ -2.24
FOXA1P55317 MTCO2P4-201ENST00000517968 247 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AL137161.1-201ENST00000532231 390 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC1.06□□□□□ -2.24
FOXA1P55317 MIR3923-201ENST00000579521 83 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 MTATP6P3-201ENST00000581686 676 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.06□□□□□ -2.24
FOXA1P55317 NIFKP6-201ENST00000598115 845 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AL356157.2-201ENST00000605122 111 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC109347.2-201ENST00000610220 349 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 MIR6504-201ENST00000613520 61 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC022513.1-201ENST00000624512 117 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 AC027514.1-201ENST00000588561 1603 ntBASIC1.06□□□□□ -2.24
FOXA1P55317 ABCA5-201ENST00000392676 8220 ntAPPRIS P1 TSL 1 (best) BASIC1.05□□□□□ -2.24
FOXA1P55317 AC092268.1-201ENST00000342691 405 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 MIR340-201ENST00000362125 95 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 Y_RNA.116-201ENST00000363292 103 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 RNU6-53P-201ENST00000365367 106 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 SNORA26.3-201ENST00000391119 136 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 MTCO3P41-201ENST00000414801 328 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.05□□□□□ -2.24
FOXA1P55317 AC123900.1-201ENST00000420390 96 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 MTCYBP8-201ENST00000422855 651 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 AL133396.1-201ENST00000432048 687 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.05□□□□□ -2.24
FOXA1P55317 SNRPEP8-201ENST00000442866 260 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 USP9YP29-201ENST00000445112 563 ntBASIC1.05□□□□□ -2.24
FOXA1P55317 RNU7-167P-201ENST00000459160 62 ntBASIC1.05□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms