Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL358934.1-201ENST00000432346 324 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH6P52701 MTND4P32-201ENST00000437189 1237 ntBASIC1.59□□□□□ -2.15
MSH6P52701 RPL23AP6-201ENST00000446637 472 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AL356010.1-201ENST00000456364 102 ntBASIC1.59□□□□□ -2.15
MSH6P52701 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.59□□□□□ -2.15
MSH6P52701 AC009646.1-201ENST00000510455 318 ntBASIC1.59□□□□□ -2.15
MSH6P52701 PTP4A1P4-201ENST00000512479 322 ntBASIC1.59□□□□□ -2.15
MSH6P52701 RNU6-430P-201ENST00000517078 107 ntBASIC1.59□□□□□ -2.15
MSH6P52701 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.59□□□□□ -2.15
MSH6P52701 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.59□□□□□ -2.15
MSH6P52701 AC115990.1-201ENST00000526957 301 ntBASIC1.59□□□□□ -2.15
MSH6P52701 HSPE1P4-201ENST00000550617 308 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AL391840.1-201ENST00000571144 367 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC008088.1-201ENST00000580993 280 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC008752.3-201ENST00000588113 712 ntBASIC1.59□□□□□ -2.15
MSH6P52701 Z99497.2-201ENST00000603634 310 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC004908.3-201ENST00000610248 625 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AL773524.1-201ENST00000614065 229 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AL158063.1-201ENST00000615349 536 ntBASIC1.59□□□□□ -2.15
MSH6P52701 AC063943.3-201ENST00000615562 356 ntBASIC1.59□□□□□ -2.15
MSH6P52701 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC1.59□□□□□ -2.15
MSH6P52701 AC078883.4-201ENST00000623218 367 ntBASIC1.59□□□□□ -2.15
MSH6P52701 MIR29C-201ENST00000385231 88 ntBASIC1.59□□□□□ -2.16
MSH6P52701 RNU6-903P-201ENST00000391270 109 ntBASIC1.59□□□□□ -2.16
MSH6P52701 RNU2-9P-201ENST00000410194 145 ntBASIC1.59□□□□□ -2.16
MSH6P52701 RNU6-293P-201ENST00000411259 106 ntBASIC1.59□□□□□ -2.16
MSH6P52701 MTATP6P18-201ENST00000417994 673 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.59□□□□□ -2.16
MSH6P52701 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.59□□□□□ -2.16
MSH6P52701 RPS29P23-201ENST00000458635 123 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC114801.2-201ENST00000503825 781 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC079140.5-201ENST00000507882 310 ntBASIC1.59□□□□□ -2.16
MSH6P52701 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC1.59□□□□□ -2.16
MSH6P52701 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC1.59□□□□□ -2.16
MSH6P52701 Y_RNA.695-201ENST00000516715 107 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC1.59□□□□□ -2.16
MSH6P52701 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.59□□□□□ -2.16
MSH6P52701 COPS8P3-201ENST00000526024 482 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AP005639.2-201ENST00000527592 928 ntBASIC1.59□□□□□ -2.16
MSH6P52701 SUB1P2-201ENST00000556401 297 ntBASIC1.59□□□□□ -2.16
MSH6P52701 SUB1P4-201ENST00000566062 339 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AL158211.1-201ENST00000566763 763 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC243960.4-201ENST00000600532 288 ntBASIC1.59□□□□□ -2.16
MSH6P52701 VN1R107P-201ENST00000601784 209 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC018889.1-201ENST00000605372 397 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AC123912.5-201ENST00000605470 343 ntBASIC1.59□□□□□ -2.16
MSH6P52701 AL357054.2-201ENST00000607644 423 ntTSL 5 BASIC1.59□□□□□ -2.16
MSH6P52701 AP001596.2-201ENST00000608410 312 ntBASIC1.59□□□□□ -2.16
MSH6P52701 SRP54-214ENST00000630962 162 ntTSL 5 BASIC1.59□□□□□ -2.16
MSH6P52701 AL161722.3-201ENST00000605789 2983 ntBASIC1.58□□□□□ -2.16
MSH6P52701 Y_RNA.399-201ENST00000383955 105 ntBASIC1.58□□□□□ -2.16
MSH6P52701 SNORA75-201ENST00000384158 137 ntBASIC1.58□□□□□ -2.16
MSH6P52701 RPS29P13-201ENST00000402041 169 ntBASIC1.58□□□□□ -2.16
MSH6P52701 RNU6-1245P-201ENST00000411130 106 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AL158823.1-201ENST00000418441 478 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.58□□□□□ -2.16
MSH6P52701 RNU6-1132P-201ENST00000459214 107 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC087884.1-201ENST00000469738 328 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC022447.4-201ENST00000504053 364 ntBASIC1.58□□□□□ -2.16
MSH6P52701 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.58□□□□□ -2.16
MSH6P52701 RNU6-965P-201ENST00000516721 96 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC087854.1-201ENST00000519706 414 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AP001893.2-201ENST00000526949 202 ntBASIC1.58□□□□□ -2.16
MSH6P52701 BNIP3P16-201ENST00000589779 534 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC091805.2-201ENST00000603848 235 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC104073.3-201ENST00000610942 955 ntBASIC1.58□□□□□ -2.16
MSH6P52701 AC005609.4-201ENST00000625071 447 ntBASIC1.58□□□□□ -2.16
MSH6P52701 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.58□□□□□ -2.16
MSH6P52701 MIR1248-201ENST00000629190 106 ntBASIC1.58□□□□□ -2.16
MSH6P52701 KIAA1551-201ENST00000312561 6230 ntAPPRIS P1 TSL 1 (best) BASIC1.57□□□□□ -2.16
MSH6P52701 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.57□□□□□ -2.16
MSH6P52701 RNU1-62P-201ENST00000362599 164 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU6-428P-201ENST00000362942 107 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU6-1164P-201ENST00000364428 107 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU6-336P-201ENST00000364891 107 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU6-1103P-201ENST00000384150 107 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU6-692P-201ENST00000384496 107 ntBASIC1.57□□□□□ -2.16
MSH6P52701 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.57□□□□□ -2.16
MSH6P52701 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.57□□□□□ -2.16
MSH6P52701 MTND1P26-201ENST00000440488 538 ntBASIC1.57□□□□□ -2.16
MSH6P52701 AC245102.2-201ENST00000448956 180 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU1-98P-201ENST00000458992 160 ntBASIC1.57□□□□□ -2.16
MSH6P52701 MTND3P5-201ENST00000512798 333 ntBASIC1.57□□□□□ -2.16
MSH6P52701 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.57□□□□□ -2.16
MSH6P52701 MTND3P12-201ENST00000559068 328 ntBASIC1.57□□□□□ -2.16
MSH6P52701 AGGF1P4-201ENST00000568249 801 ntBASIC1.57□□□□□ -2.16
MSH6P52701 MIR3941-201ENST00000582572 103 ntBASIC1.57□□□□□ -2.16
MSH6P52701 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.57□□□□□ -2.16
MSH6P52701 AC008133.2-201ENST00000624540 351 ntBASIC1.57□□□□□ -2.16
MSH6P52701 RNU4-15P-201ENST00000362613 141 ntBASIC1.56□□□□□ -2.16
MSH6P52701 RNU6-1141P-201ENST00000364520 107 ntBASIC1.56□□□□□ -2.16
MSH6P52701 RNU6-43P-201ENST00000384302 107 ntBASIC1.56□□□□□ -2.16
MSH6P52701 SNORD14D-201ENST00000384390 87 ntBASIC1.56□□□□□ -2.16
MSH6P52701 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC1.56□□□□□ -2.16
MSH6P52701 HSPE1P24-201ENST00000450782 238 ntBASIC1.56□□□□□ -2.16
MSH6P52701 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC1.56□□□□□ -2.16
MSH6P52701 RNU6-405P-201ENST00000516637 110 ntBASIC1.56□□□□□ -2.16
MSH6P52701 AL137161.1-201ENST00000532231 390 ntBASIC1.56□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 104.4 ms