Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 LINC02118-202ENST00000510583 419 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXA1P49639 RNU2-53P-201ENST00000516257 147 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.29□□□□□ -2.04
HOXA1P49639 AC012229.1-201ENST00000558699 499 ntTSL 4 BASIC2.29□□□□□ -2.04
HOXA1P49639 MIR5571-201ENST00000577998 113 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 MIR3199-1-201ENST00000582434 88 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AL360085.1-201ENST00000604713 532 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AL034555.1-201ENST00000604816 211 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXA1P49639 MIR7112-201ENST00000616126 65 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC2.29□□□□□ -2.04
HOXA1P49639 SCARNA4-201ENST00000629045 128 ntBASIC2.29□□□□□ -2.04
HOXA1P49639 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXA1P49639 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA1P49639 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC2.28□□□□□ -2.04
HOXA1P49639 RNU1-72P-201ENST00000362976 153 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 Y_RNA.106-201ENST00000363189 100 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 RNU6-450P-201ENST00000364654 107 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 RNU4-9P-201ENST00000364951 139 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 Y_RNA.358-201ENST00000365491 99 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 RNU6-708P-201ENST00000384217 107 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 SNORA54-201ENST00000384281 123 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 RNA5SP210-201ENST00000391034 120 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 MIR190B-201ENST00000401119 79 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 EIF1AXP1-201ENST00000419267 435 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 EIF4EP4-201ENST00000424916 578 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 LINC02532-205ENST00000430094 628 ntTSL 5 BASIC2.28□□□□□ -2.04
HOXA1P49639 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXA1P49639 snoU13.30-201ENST00000458951 104 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 AC090515.1-201ENST00000465295 476 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXA1P49639 HMGB1P35-201ENST00000503360 598 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.28□□□□□ -2.04
HOXA1P49639 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXA1P49639 SCGB1D5P-201ENST00000515134 247 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 RNU6-988P-201ENST00000519081 107 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.28□□□□□ -2.04
HOXA1P49639 UBL5P4-201ENST00000562584 236 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXA1P49639 AC103810.1-201ENST00000579873 453 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 AL683887.1-201ENST00000603401 287 ntTSL 3 BASIC2.28□□□□□ -2.04
HOXA1P49639 AC138305.3-201ENST00000624988 240 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 MIR203B-201ENST00000636080 86 ntBASIC2.28□□□□□ -2.04
HOXA1P49639 CCDC178-213ENST00000583930 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.28□□□□□ -2.05
HOXA1P49639 AC000403.1-201ENST00000613696 3585 ntBASIC2.28□□□□□ -2.05
HOXA1P49639 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC2.27□□□□□ -2.05
HOXA1P49639 AC080128.1-201ENST00000474389 1917 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 RNU6-655P-201ENST00000362858 107 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 Y_RNA.162-201ENST00000363683 102 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 DEFB119-202ENST00000376315 324 ntAPPRIS ALT2 TSL 1 (best) BASIC2.27□□□□□ -2.05
HOXA1P49639 RNU6-26P-201ENST00000383985 107 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 RNU6-142P-201ENST00000384019 107 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 RNU6-1083P-201ENST00000384022 107 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 U8.10-201ENST00000384260 133 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 Y_RNA.527-201ENST00000384573 102 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 MIR606-201ENST00000384851 96 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 MIR524-201ENST00000385242 87 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 SNORA26.3-201ENST00000391119 136 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 SNORA12-201ENST00000391162 147 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXA1P49639 MTND2P23-201ENST00000422990 651 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 MTCYBP10-201ENST00000424905 650 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 AC078809.1-201ENST00000427601 140 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXA1P49639 LINC00393-201ENST00000443621 282 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXA1P49639 RN7SKP210-201ENST00000459176 261 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 SLC25A15P5-201ENST00000508033 253 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.27□□□□□ -2.05
HOXA1P49639 AC008885.1-201ENST00000514930 301 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.27□□□□□ -2.05
HOXA1P49639 ZNF861P-201ENST00000588126 639 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 RPL30P11-203ENST00000598995 310 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 AL132822.1-201ENST00000617063 513 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 MIR4272-201ENST00000635924 64 ntBASIC2.27□□□□□ -2.05
HOXA1P49639 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.27□□□□□ -2.05
HOXA1P49639 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.27□□□□□ -2.05
HOXA1P49639 MTND5P16-201ENST00000460269 1703 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC073346.2-201ENST00000624724 2058 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC2.26□□□□□ -2.05
HOXA1P49639 AC092268.1-201ENST00000342691 405 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 MIR26A1-201ENST00000362205 77 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 RNU4-15P-201ENST00000362613 141 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 SNORA63C-201ENST00000364578 129 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 RNU6-378P-201ENST00000384324 107 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 RNVU1-14-201ENST00000384770 164 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 Y_RNA.645-201ENST00000391229 102 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 UBA52P6-201ENST00000399822 382 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 MRPL42P3-201ENST00000401492 326 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 Y_RNA.605-201ENST00000410577 105 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXA1P49639 AC007098.1-201ENST00000420122 367 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC012306.1-201ENST00000423267 114 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXA1P49639 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.26□□□□□ -2.05
HOXA1P49639 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXA1P49639 AC099799.1-201ENST00000439809 192 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 snoU13.14-201ENST00000459372 104 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC2.26□□□□□ -2.05
HOXA1P49639 AC003982.1-202ENST00000469928 248 ntBASIC2.26□□□□□ -2.05
HOXA1P49639 AP000870.1-201ENST00000472927 406 ntBASIC2.26□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 134.7 ms