Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 RPL27AP5-201ENST00000469428 449 ntBASIC2.61□□□□□ -1.99
SOX2P48431 RN7SL601P-201ENST00000471221 293 ntBASIC2.61□□□□□ -1.99
SOX2P48431 RPS29P2-201ENST00000479278 136 ntBASIC2.61□□□□□ -1.99
SOX2P48431 RPL23AP70-201ENST00000483361 460 ntBASIC2.61□□□□□ -1.99
SOX2P48431 AC027176.1-201ENST00000560204 514 ntBASIC2.61□□□□□ -1.99
SOX2P48431 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC2.61□□□□□ -1.99
SOX2P48431 MIR5695-201ENST00000579717 85 ntBASIC2.61□□□□□ -1.99
SOX2P48431 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC2.61□□□□□ -1.99
SOX2P48431 AL121655.1-201ENST00000605811 308 ntBASIC2.61□□□□□ -1.99
SOX2P48431 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC2.61□□□□□ -1.99
SOX2P48431 AC018692.3-201ENST00000623929 123 ntBASIC2.61□□□□□ -1.99
SOX2P48431 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SOX2P48431 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC2.6□□□□□ -1.99
SOX2P48431 AC026241.1-201ENST00000517873 2142 ntBASIC2.6□□□□□ -1.99
SOX2P48431 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 RNU6-238P-201ENST00000363313 106 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RNU5F-3P-201ENST00000363767 117 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RNU6-280P-201ENST00000364145 104 ntBASIC2.6□□□□□ -1.99
SOX2P48431 SNORD56.5-201ENST00000364281 72 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RNA5-8SP4-201ENST00000365096 150 ntBASIC2.6□□□□□ -1.99
SOX2P48431 CXorf65-201ENST00000374251 601 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 SNORA7.4-201ENST00000384249 137 ntBASIC2.6□□□□□ -1.99
SOX2P48431 Y_RNA.574-201ENST00000384766 95 ntBASIC2.6□□□□□ -1.99
SOX2P48431 MIR10B-201ENST00000385011 110 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RNA5SP213-201ENST00000391031 106 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RNU6-1109P-201ENST00000391187 107 ntBASIC2.6□□□□□ -1.99
SOX2P48431 SDAD1P3-201ENST00000427380 333 ntBASIC2.6□□□□□ -1.99
SOX2P48431 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX2P48431 Z75741.1-201ENST00000446793 314 ntBASIC2.6□□□□□ -1.99
SOX2P48431 RN7SL293P-201ENST00000481765 281 ntBASIC2.6□□□□□ -1.99
SOX2P48431 SNORA40.15-201ENST00000516884 107 ntBASIC2.6□□□□□ -1.99
SOX2P48431 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC2.6□□□□□ -1.99
SOX2P48431 UBL5P4-201ENST00000562584 236 ntBASIC2.6□□□□□ -1.99
SOX2P48431 AC090517.1-201ENST00000569307 266 ntBASIC2.6□□□□□ -1.99
SOX2P48431 AL670379.2-201ENST00000604983 252 ntBASIC2.6□□□□□ -1.99
SOX2P48431 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX2P48431 U6.92-201ENST00000636464 89 ntBASIC2.6□□□□□ -1.99
SOX2P48431 MIR7515-201ENST00000637837 67 ntBASIC2.6□□□□□ -1.99
SOX2P48431 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.6□□□□□ -1.99
SOX2P48431 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX2P48431 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.59□□□□□ -1.99
SOX2P48431 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SOX2P48431 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
SOX2P48431 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX2P48431 MIR22-201ENST00000362190 85 ntBASIC2.59□□□□□ -1.99
SOX2P48431 RNU4-15P-201ENST00000362613 141 ntBASIC2.59□□□□□ -1.99
SOX2P48431 Y_RNA.276-201ENST00000364732 109 ntBASIC2.59□□□□□ -1.99
SOX2P48431 RNU6-378P-201ENST00000384324 107 ntBASIC2.59□□□□□ -1.99
SOX2P48431 MIR181A2-201ENST00000384863 110 ntBASIC2.59□□□□□ -1.99
SOX2P48431 MIR200C-201ENST00000384980 68 ntBASIC2.59□□□□□ -1.99
SOX2P48431 SNORD78.2-201ENST00000391076 69 ntBASIC2.59□□□□□ -1.99
SOX2P48431 MIR320B2-201ENST00000408479 138 ntBASIC2.59□□□□□ -1.99
SOX2P48431 AL590999.1-206ENST00000437947 436 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX2P48431 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX2P48431 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC2.59□□□□□ -1.99
SOX2P48431 RPEP5-201ENST00000441137 268 ntBASIC2.59□□□□□ -1.99
SOX2P48431 FCF1P4-201ENST00000448326 183 ntBASIC2.59□□□□□ -1.99
SOX2P48431 AC007215.1-201ENST00000464893 276 ntBASIC2.59□□□□□ -1.99
SOX2P48431 AC109925.1-201ENST00000478069 331 ntBASIC2.59□□□□□ -1.99
SOX2P48431 AC010469.2-201ENST00000496412 480 ntBASIC2.59□□□□□ -1.99
SOX2P48431 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC2.59□□□□□ -1.99
SOX2P48431 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX2P48431 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.59□□□□□ -1.99
SOX2P48431 RPL30P11-203ENST00000598995 310 ntBASIC2.59□□□□□ -1.99
SOX2P48431 AL356575.1-201ENST00000603008 283 ntBASIC2.59□□□□□ -1.99
SOX2P48431 RAC1P9-201ENST00000604990 392 ntBASIC2.59□□□□□ -1.99
SOX2P48431 PCGEM1.1-201ENST00000613431 131 ntBASIC2.59□□□□□ -1.99
SOX2P48431 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.59□□□□□ -1.99
SOX2P48431 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC2.59□□□□□ -2
SOX2P48431 AL161912.2-201ENST00000565707 3007 ntBASIC2.59□□□□□ -2
SOX2P48431 TSLP-202ENST00000379706 2411 ntTSL 1 (best) BASIC2.59□□□□□ -2
SOX2P48431 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.59□□□□□ -2
SOX2P48431 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.59□□□□□ -2
SOX2P48431 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.58□□□□□ -2
SOX2P48431 AC069528.2-201ENST00000624849 1991 ntBASIC2.58□□□□□ -2
SOX2P48431 ZNF204P-201ENST00000416749 2397 ntBASIC2.58□□□□□ -2
SOX2P48431 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
SOX2P48431 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
SOX2P48431 snoU2_19.1-201ENST00000362361 80 ntBASIC2.58□□□□□ -2
SOX2P48431 U3.9-201ENST00000363823 204 ntBASIC2.58□□□□□ -2
SOX2P48431 RNU6-873P-201ENST00000363833 107 ntBASIC2.58□□□□□ -2
SOX2P48431 SNORD21-201ENST00000383953 95 ntBASIC2.58□□□□□ -2
SOX2P48431 RNU6-281P-201ENST00000384212 103 ntBASIC2.58□□□□□ -2
SOX2P48431 MIR568-201ENST00000385036 95 ntBASIC2.58□□□□□ -2
SOX2P48431 SNORA26.7-201ENST00000391288 122 ntBASIC2.58□□□□□ -2
SOX2P48431 FO393413.1-201ENST00000402892 195 ntBASIC2.58□□□□□ -2
SOX2P48431 RNA5SP201-201ENST00000410316 124 ntBASIC2.58□□□□□ -2
SOX2P48431 RPL19P1-201ENST00000411635 428 ntBASIC2.58□□□□□ -2
SOX2P48431 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC2.58□□□□□ -2
SOX2P48431 AL445305.1-201ENST00000432577 575 ntBASIC2.58□□□□□ -2
SOX2P48431 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.58□□□□□ -2
SOX2P48431 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC2.58□□□□□ -2
SOX2P48431 AC145146.1-201ENST00000496370 254 ntBASIC2.58□□□□□ -2
SOX2P48431 RNU6-397P-201ENST00000516226 104 ntBASIC2.58□□□□□ -2
SOX2P48431 Y_RNA.713-201ENST00000517013 96 ntBASIC2.58□□□□□ -2
SOX2P48431 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC2.58□□□□□ -2
SOX2P48431 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 108.5 ms