Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AL359314.1-201ENST00000616913 261 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC084768.2-201ENST00000622736 221 ntBASIC1.84□□□□□ -2.11
SDC3O75056 AC091932.3-201ENST00000624223 323 ntBASIC1.84□□□□□ -2.11
SDC3O75056 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.84□□□□□ -2.12
SDC3O75056 PYGO1-201ENST00000302000 8488 ntTSL 1 (best) BASIC1.84□□□□□ -2.12
SDC3O75056 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
SDC3O75056 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.83□□□□□ -2.12
SDC3O75056 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
SDC3O75056 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
SDC3O75056 RNA5SP190-201ENST00000365222 118 ntBASIC1.83□□□□□ -2.12
SDC3O75056 RNU6-1329P-201ENST00000365664 107 ntBASIC1.83□□□□□ -2.12
SDC3O75056 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
SDC3O75056 SNORD14D-201ENST00000384390 87 ntBASIC1.83□□□□□ -2.12
SDC3O75056 MIR9-3-201ENST00000385084 90 ntBASIC1.83□□□□□ -2.12
SDC3O75056 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.83□□□□□ -2.12
SDC3O75056 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
SDC3O75056 RNU11-3P-201ENST00000391111 133 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL627390.1-201ENST00000396055 340 ntBASIC1.83□□□□□ -2.12
SDC3O75056 RPL23AP36-201ENST00000413895 458 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL590135.1-201ENST00000422215 156 ntBASIC1.83□□□□□ -2.12
SDC3O75056 BX510359.4-201ENST00000423750 193 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC019205.3-201ENST00000424573 156 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL359672.1-201ENST00000442302 409 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC016700.2-201ENST00000446011 156 ntBASIC1.83□□□□□ -2.12
SDC3O75056 RN7SL274P-201ENST00000492268 272 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC015911.1-201ENST00000495111 156 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC008628.2-201ENST00000502605 298 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC108729.3-201ENST00000513484 108 ntBASIC1.83□□□□□ -2.12
SDC3O75056 RNU2-44P-201ENST00000516795 194 ntBASIC1.83□□□□□ -2.12
SDC3O75056 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.83□□□□□ -2.12
SDC3O75056 GNAI2P1-201ENST00000541815 315 ntBASIC1.83□□□□□ -2.12
SDC3O75056 TRAV32-201ENST00000553993 340 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AC007375.1-201ENST00000554513 578 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AP005120.1-201ENST00000579321 352 ntTSL 3 BASIC1.83□□□□□ -2.12
SDC3O75056 AC100830.2-201ENST00000581636 240 ntBASIC1.83□□□□□ -2.12
SDC3O75056 BNIP3P25-201ENST00000596023 559 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL357078.3-201ENST00000607528 618 ntBASIC1.83□□□□□ -2.12
SDC3O75056 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.83□□□□□ -2.12
SDC3O75056 AL121757.2-201ENST00000611223 313 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL773524.1-201ENST00000614065 229 ntBASIC1.83□□□□□ -2.12
SDC3O75056 DUXAP9-208ENST00000622815 614 ntBASIC1.83□□□□□ -2.12
SDC3O75056 AL450472.1-202ENST00000637286 180 ntBASIC1.83□□□□□ -2.12
SDC3O75056 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.82□□□□□ -2.12
SDC3O75056 RNY3P3-201ENST00000363816 102 ntBASIC1.82□□□□□ -2.12
SDC3O75056 RNU4-56P-201ENST00000364700 142 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AL590002.1-201ENST00000406554 418 ntBASIC1.82□□□□□ -2.12
SDC3O75056 RNA5SP201-201ENST00000410316 124 ntBASIC1.82□□□□□ -2.12
SDC3O75056 SRIP3-201ENST00000413200 219 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.82□□□□□ -2.12
SDC3O75056 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.82□□□□□ -2.12
SDC3O75056 MTCO1P20-201ENST00000425366 358 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AL589823.1-201ENST00000429577 183 ntBASIC1.82□□□□□ -2.12
SDC3O75056 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.82□□□□□ -2.12
SDC3O75056 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.82□□□□□ -2.12
SDC3O75056 AC145146.1-201ENST00000496370 254 ntBASIC1.82□□□□□ -2.12
SDC3O75056 RPS29P11-201ENST00000496507 171 ntBASIC1.82□□□□□ -2.12
SDC3O75056 RNU6-314P-201ENST00000516574 104 ntBASIC1.82□□□□□ -2.12
SDC3O75056 SNORA31.16-201ENST00000516773 139 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.82□□□□□ -2.12
SDC3O75056 ZNF519P2-201ENST00000557032 169 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AL109918.3-201ENST00000603072 338 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC012493.3-201ENST00000604494 112 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC064836.2-201ENST00000609491 462 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC1.82□□□□□ -2.12
SDC3O75056 SNORA43.4-201ENST00000629559 138 ntBASIC1.82□□□□□ -2.12
SDC3O75056 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.82□□□□□ -2.12
SDC3O75056 AC009487.4-201ENST00000624969 3585 ntBASIC1.82□□□□□ -2.12
SDC3O75056 MTND4P23-201ENST00000447723 1363 ntBASIC1.82□□□□□ -2.12
SDC3O75056 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
SDC3O75056 Y_RNA.4-201ENST00000362333 112 ntBASIC1.81□□□□□ -2.12
SDC3O75056 RNU6-451P-201ENST00000362921 107 ntBASIC1.81□□□□□ -2.12
SDC3O75056 RNU6-457P-201ENST00000363999 107 ntBASIC1.81□□□□□ -2.12
SDC3O75056 RNA5SP465-201ENST00000391195 109 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AL356432.1-201ENST00000405809 419 ntBASIC1.81□□□□□ -2.12
SDC3O75056 SUMO2P12-201ENST00000405924 140 ntBASIC1.81□□□□□ -2.12
SDC3O75056 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC3O75056 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC3O75056 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC3O75056 RPS29P27-201ENST00000463711 170 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC132942.1-201ENST00000486753 483 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.81□□□□□ -2.12
SDC3O75056 AC091874.1-201ENST00000511402 339 ntBASIC1.81□□□□□ -2.12
SDC3O75056 RNU6-612P-201ENST00000516909 102 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC016256.1-201ENST00000547971 354 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC025423.5-201ENST00000550230 219 ntBASIC1.81□□□□□ -2.12
SDC3O75056 SCOCP1-201ENST00000554676 349 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.81□□□□□ -2.12
SDC3O75056 AC021231.3-201ENST00000558497 370 ntBASIC1.81□□□□□ -2.12
SDC3O75056 MIR3923-201ENST00000579521 83 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC010525.2-201ENST00000590920 195 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AL096840.1-201ENST00000603287 93 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AL078605.1-201ENST00000603529 500 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC068944.2-201ENST00000610373 403 ntBASIC1.81□□□□□ -2.12
SDC3O75056 FAM157A-202ENST00000615155 405 ntBASIC1.81□□□□□ -2.12
SDC3O75056 AC005296.1-201ENST00000616145 209 ntBASIC1.81□□□□□ -2.12
SDC3O75056 MIR1248-201ENST00000629190 106 ntBASIC1.81□□□□□ -2.12
SDC3O75056 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.81□□□□□ -2.12
SDC3O75056 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC1.8□□□□□ -2.12
SDC3O75056 RNU6-227P-201ENST00000362865 103 ntBASIC1.8□□□□□ -2.12
SDC3O75056 Y_RNA.238-201ENST00000364441 102 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 163.7 ms