Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RPL21P38-201ENST00000418090 167 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 CBX3P6-201ENST00000430257 527 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 snoU13.14-201ENST00000459372 104 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AC025465.3-201ENST00000510570 311 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AL034555.1-201ENST00000604816 211 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 MIR8057-201ENST00000620957 69 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 AC002064.3-201ENST00000623448 346 ntBASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 OSTN-202ENST00000445281 3134 ntTSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 RNF6-201ENST00000346166 3282 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
PCIF1Q9H4Z3 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 SLC27A2-203ENST00000544960 2025 ntTSL 2 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 SNORA54-201ENST00000384281 123 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 Y_RNA.483-201ENST00000384380 101 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-159P-201ENST00000391080 106 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AIMP1P2-201ENST00000425294 312 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AL358075.3-201ENST00000426289 226 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 WARS2P1-201ENST00000429678 537 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AL359706.1-201ENST00000437748 315 ntTSL 3 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AC112771.1-201ENST00000463581 102 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 HMGB1P35-201ENST00000503360 598 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 RNU6-1143P-201ENST00000516125 104 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 SNORA31.6-201ENST00000516241 130 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AP003733.2-201ENST00000529409 171 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 MIR3136-201ENST00000583498 78 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AC240442.1-201ENST00000616055 283 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 AC110079.1-202ENST00000635213 138 ntBASIC3.34□□□□□ -1.87
PCIF1Q9H4Z3 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.34□□□□□ -1.88
PCIF1Q9H4Z3 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.88
PCIF1Q9H4Z3 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
PCIF1Q9H4Z3 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 MIR22-201ENST00000362190 85 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.376-201ENST00000365638 108 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.439-201ENST00000384119 94 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 MIR591-201ENST00000385290 95 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 MT-TG-201ENST00000387429 68 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AL079342.1-201ENST00000401460 267 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 RNA5SP293-201ENST00000410527 113 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1001P-201ENST00000411265 100 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 TRAPPC2P8-201ENST00000440676 396 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-567P-201ENST00000516746 107 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC093023.1-201ENST00000547375 507 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC136932.1-201ENST00000574771 208 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 MIR4659A-201ENST00000580269 81 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC062037.2-201ENST00000610137 73 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC005296.1-201ENST00000616145 209 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 XIST_intron.1-201ENST00000619444 68 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 AC007318.2-201ENST00000620999 243 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 MIR622-201ENST00000638396 96 ntBASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 ADGRG4-203ENST00000394143 9931 ntAPPRIS P2 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
PCIF1Q9H4Z3 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 OR56A5-201ENST00000340110 738 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 MIR148B-201ENST00000362252 99 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1159P-201ENST00000362933 107 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-137P-201ENST00000363680 108 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 Y_RNA.188-201ENST00000363952 111 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-805P-201ENST00000365643 106 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-926P-201ENST00000384075 107 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 MIR186-201ENST00000384988 86 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 MIR549A-201ENST00000385268 96 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNA5SP354-201ENST00000391247 136 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 UBE2Q2P12-201ENST00000414573 204 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-1271P-201ENST00000517049 105 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 RNU6-570P-201ENST00000517051 105 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AC023824.2-201ENST00000566185 400 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 CYP4A27P-201ENST00000567218 190 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AC073410.2-201ENST00000603240 332 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 AL138963.2-201ENST00000605137 226 ntBASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 ADARB1-213ENST00000611195 159 ntTSL 5 BASIC3.32□□□□□ -1.88
PCIF1Q9H4Z3 uc_338.14-201ENST00000613162 166 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 127.1 ms