| CLUAP1 | Q96AJ1 | AL035423.1-201 | ENST00000420331 | 213 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AP000235.1-201 | ENST00000424017 | 479 nt | TSL 3 BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC009237.7-201 | ENST00000447357 | 229 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | NDUFB4P10-201 | ENST00000452541 | 359 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | SCARNA11.3-201 | ENST00000517276 | 130 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC009623.2-201 | ENST00000522524 | 465 nt | TSL 3 BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | ATXN3-248 | ENST00000558190 | 26812 nt | APPRIS P1 TSL 1 (best) BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC130289.1-201 | ENST00000577321 | 73 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC006130.2-201 | ENST00000586202 | 326 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC012254.1-201 | ENST00000592747 | 200 nt | TSL 3 BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AC018692.3-201 | ENST00000623929 | 123 nt | BASIC | 4.59 | □□□□□ -1.67 | | |
| CLUAP1 | Q96AJ1 | AP003122.5-201 | ENST00000527668 | 3766 nt | BASIC | 4.59 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RGPD1-202 | ENST00000409776 | 6692 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.59 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | CLIC2-202 | ENST00000369449 | 2655 nt | APPRIS P1 TSL 1 (best) BASIC | 4.59 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | CYSLTR1-203 | ENST00000614798 | 2681 nt | APPRIS P1 TSL 1 (best) BASIC | 4.59 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC087521.2-201 | ENST00000499066 | 2190 nt | TSL 2 BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | SNORD9-201 | ENST00000362566 | 104 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU6-486P-201 | ENST00000363116 | 107 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU6-1264P-201 | ENST00000383891 | 107 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Z98941.1-201 | ENST00000407764 | 100 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ELOCP21-201 | ENST00000412558 | 336 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | EIF4EP4-201 | ENST00000424916 | 578 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | APOA2-205 | ENST00000468465 | 421 nt | TSL 2 BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC026784.1-201 | ENST00000507986 | 352 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU6-579P-201 | ENST00000516879 | 102 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC034105.4-201 | ENST00000568304 | 277 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC103810.1-201 | ENST00000579873 | 453 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MIR3674-201 | ENST00000636576 | 68 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MAPK10-322 | ENST00000641485 | 4530 nt | BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | QSER1-204 | ENST00000527788 | 5052 nt | TSL 2 BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MCF2-210 | ENST00000536274 | 3461 nt | APPRIS ALT2 TSL 2 BASIC | 4.58 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ABCA5-208 | ENST00000588877 | 6525 nt | APPRIS P1 TSL 1 (best) BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | CRB1-201 | ENST00000367397 | 9023 nt | TSL 2 BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | PLAG1-201 | ENST00000316981 | 7322 nt | APPRIS P1 TSL 1 (best) BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | FAM208A-202 | ENST00000431842 | 7119 nt | TSL 1 (best) BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.383-201 | ENST00000383855 | 97 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU6-1248P-201 | ENST00000391096 | 64 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AL138878.1-201 | ENST00000405131 | 347 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | BCL2L11-207 | ENST00000405953 | 425 nt | TSL 1 (best) BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MIR1298-201 | ENST00000408783 | 112 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MIR1183-201 | ENST00000408856 | 89 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Z98742.2-201 | ENST00000431564 | 187 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MTND5P15-201 | ENST00000434246 | 349 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RN7SL542P-201 | ENST00000467147 | 294 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU1-45P-201 | ENST00000517191 | 141 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC009803.1-201 | ENST00000551531 | 416 nt | TSL 3 BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC011461.1-201 | ENST00000592671 | 357 nt | TSL 3 BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC008739.2-201 | ENST00000597006 | 317 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | U4.6-201 | ENST00000621618 | 127 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC068205.3-201 | ENST00000636385 | 468 nt | BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | BCL2L11-225 | ENST00000640419 | 249 nt | APPRIS ALT2 TSL 5 BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | SAMD3-214 | ENST00000532763 | 3690 nt | TSL 5 BASIC | 4.57 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | DTWD1-201 | ENST00000251250 | 13776 nt | APPRIS P1 TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RAPGEF6-202 | ENST00000308008 | 4176 nt | TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | KIF21A-203 | ENST00000541463 | 4866 nt | TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC019117.3-201 | ENST00000637807 | 3523 nt | APPRIS P1 TSL 5 BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ADGRL2-207 | ENST00000370723 | 5254 nt | TSL 5 BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RGS18-201 | ENST00000367460 | 2150 nt | APPRIS P1 TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.275-201 | ENST00000364726 | 110 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | U3.39-201 | ENST00000408569 | 239 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC004386.2-201 | ENST00000441858 | 148 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | LINC02198-202 | ENST00000505371 | 526 nt | TSL 5 BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | SNORA27.4-201 | ENST00000516650 | 95 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC011471.1-201 | ENST00000585766 | 187 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC110079.1-202 | ENST00000635213 | 138 nt | BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | PCDH11X-208 | ENST00000504220 | 4017 nt | APPRIS ALT2 TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ADGRG2-206 | ENST00000360279 | 4702 nt | TSL 1 (best) BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | FNBP1L-203 | ENST00000370253 | 3889 nt | APPRIS ALT1 TSL 5 BASIC | 4.56 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | NUFIP2-201 | ENST00000225388 | 10850 nt | APPRIS P1 TSL 1 (best) BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RMDN2-203 | ENST00000402091 | 1973 nt | TSL 2 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC068647.1-201 | ENST00000489539 | 2265 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.83-201 | ENST00000363005 | 113 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.297-201 | ENST00000364950 | 91 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNA5-8SP4-201 | ENST00000365096 | 150 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MIR554-201 | ENST00000384874 | 96 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AL136320.1-201 | ENST00000417273 | 430 nt | TSL 3 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | GPC5-AS1-201 | ENST00000419288 | 393 nt | TSL 3 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC027124.2-201 | ENST00000428249 | 105 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC069023.1-201 | ENST00000442231 | 221 nt | TSL 3 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC104619.4-201 | ENST00000510773 | 249 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC023632.4-201 | ENST00000517783 | 191 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC069133.1-201 | ENST00000522857 | 566 nt | TSL 4 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | TGIF1P1-201 | ENST00000558095 | 802 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | LINC02253-201 | ENST00000559321 | 448 nt | TSL 2 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | CR936218.1-201 | ENST00000570454 | 304 nt | TSL 2 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MIR5006-201 | ENST00000583027 | 110 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AL109918.3-201 | ENST00000603072 | 338 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC006380.1-201 | ENST00000603598 | 186 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC107294.3-201 | ENST00000609211 | 526 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC004467.1-201 | ENST00000615678 | 330 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | MYOT-208 | ENST00000515645 | 1578 nt | TSL 2 BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | AC092593.1-201 | ENST00000515413 | 1815 nt | BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | TSLP-202 | ENST00000379706 | 2411 nt | TSL 1 (best) BASIC | 4.55 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ADGRL2-211 | ENST00000370730 | 6173 nt | TSL 5 BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | XRCC4-205 | ENST00000511817 | 1636 nt | APPRIS P4 TSL 1 (best) BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | NCAM2-201 | ENST00000284894 | 4699 nt | APPRIS ALT2 TSL 5 BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.446-201 | ENST00000384178 | 104 nt | BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | Y_RNA.555-201 | ENST00000384673 | 110 nt | BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | RNU2-54P-201 | ENST00000410299 | 190 nt | BASIC | 4.54 | □□□□□ -1.68 | | |
| CLUAP1 | Q96AJ1 | ATP5A1P2-201 | ENST00000412323 | 255 nt | BASIC | 4.54 | □□□□□ -1.68 | | |