Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 RNU6-746P-201ENST00000384112 109 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 Y_RNA.464-201ENST00000384282 110 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-658P-201ENST00000384606 106 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 RPS15AP7-201ENST00000439294 405 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AL031659.1-201ENST00000447075 539 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 NDUFB4P10-201ENST00000452541 359 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AL109933.2-201ENST00000452651 260 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AC010401.1-201ENST00000463867 348 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 SEPT14P8-201ENST00000508026 178 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 RNU4ATAC3P-201ENST00000516699 126 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.9□□□□□ -1.79
USHBP1Q8N6Y0 SGIP1-206ENST00000435165 3646 ntAPPRIS ALT2 TSL 2 BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 WDR72-201ENST00000360509 5887 ntAPPRIS P2 TSL 1 (best) BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 KNL1-202ENST00000399668 7607 ntAPPRIS ALT2 TSL 1 (best) BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 LUZP2-208ENST00000620308 4981 ntTSL 5 BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-942P-201ENST00000363002 107 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-142P-201ENST00000384019 107 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-926P-201ENST00000384075 107 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-318P-201ENST00000384283 103 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-378P-201ENST00000384324 107 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 MIR518D-201ENST00000385014 87 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RNU2-52P-201ENST00000410680 190 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AC098831.1-201ENST00000440661 216 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 HSPE1P25-201ENST00000455484 251 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RPL23AP14-201ENST00000468281 468 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 RPL30P5-201ENST00000494923 336 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AL356157.2-201ENST00000605122 111 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AC024581.2-201ENST00000619986 252 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 AC127459.3-201ENST00000624328 466 ntBASIC3.89□□□□□ -1.79
USHBP1Q8N6Y0 SYNE1-212ENST00000423061 27436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 ZNF826P-207ENST00000622273 1910 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-326P-201ENST00000365480 107 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-898P-201ENST00000365627 104 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-217P-201ENST00000384164 104 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-662P-201ENST00000384253 104 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-102P-201ENST00000384485 104 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-541P-201ENST00000384709 110 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 SNORA53-201ENST00000391141 249 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU1-139P-201ENST00000391307 165 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RPS4XP3-201ENST00000398541 413 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 RNU5A-5P-201ENST00000411054 116 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 HMGN2P16-201ENST00000456802 261 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 AC087477.1-201ENST00000465747 340 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 AP000870.1-201ENST00000472927 406 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 ZNF192P1-203ENST00000565888 810 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 SNORD113-5-201ENST00000607261 78 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 AL109837.2-201ENST00000632608 295 ntTSL 3 BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 U2.21-201ENST00000637295 81 ntBASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.88□□□□□ -1.79
USHBP1Q8N6Y0 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-545P-201ENST00000362681 104 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-778P-201ENST00000363269 103 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 SNORA29-201ENST00000384183 140 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 MIR184-201ENST00000384962 84 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 RNA5SP213-201ENST00000391031 106 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 AL512844.2-201ENST00000433990 593 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 RNU6-1114P-201ENST00000516022 107 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 CBX3P4-201ENST00000538909 354 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 AC016256.1-201ENST00000547971 354 ntBASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 VNN1-201ENST00000367928 3106 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.87□□□□□ -1.79
USHBP1Q8N6Y0 EVI2A-201ENST00000247270 1860 ntAPPRIS P3 TSL 2 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 SRP72P2-201ENST00000344851 1979 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 CALCRL-203ENST00000410068 1984 ntAPPRIS P1 TSL 2 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 Y_RNA.44-201ENST00000362676 108 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RNU1-73P-201ENST00000383971 164 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 MIR493-201ENST00000385254 89 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 PCNPP3-201ENST00000393579 471 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RNA5SP129-201ENST00000410276 118 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 SNORD12B-201ENST00000410433 91 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RNA5SP184-201ENST00000411071 108 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RPL26P27-201ENST00000414397 437 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC087499.2-201ENST00000432861 149 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC005002.2-201ENST00000438228 269 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 KRTAP19-11P-201ENST00000439851 104 ntBASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.86□□□□□ -1.79
USHBP1Q8N6Y0 RNU7-120P-201ENST00000459334 63 ntBASIC3.86□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101.2 ms