Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 snoU13.6-201ENST00000458785 104 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 RNU6-120P-201ENST00000516077 103 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 RNU6-988P-201ENST00000519081 107 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 EIF4A1P12-201ENST00000551910 141 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 AL356575.1-201ENST00000603008 283 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CCDC144BQ3MJ40 TRDN-201ENST00000334268 4770 ntAPPRIS P3 TSL 1 (best) BASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 SNORA63-201ENST00000363450 132 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 SNORD115-8-201ENST00000363856 82 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 SNORD115-38-201ENST00000365037 82 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 Y_RNA.364-201ENST00000365532 101 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 RNU6-474P-201ENST00000384243 107 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 FO393413.1-201ENST00000402892 195 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 MTCO3P29-201ENST00000432119 779 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 UQCRHP3-201ENST00000451503 251 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 MIR2355-201ENST00000517199 87 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 AL713866.2-201ENST00000603579 219 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 SNRPGP17-201ENST00000603780 214 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 RPL17P51-201ENST00000605218 238 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 AL355802.3-201ENST00000607571 545 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 AC091925.1-201ENST00000623204 462 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 AC243829.7-201ENST00000633081 225 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 MIR622-201ENST00000638396 96 ntBASIC3.55□□□□□ -1.84
CCDC144BQ3MJ40 DOPEY1-203ENST00000369739 7743 ntAPPRIS ALT1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 Y_RNA.202-201ENST00000364083 110 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 SNORA71.1-201ENST00000364523 117 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 Y_RNA.319-201ENST00000365138 92 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 SNORA69.1-201ENST00000390904 137 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 AL161788.1-201ENST00000441805 169 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 MTCYBP6-201ENST00000441810 138 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 OXR1-205ENST00000442977 2956 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 ITCH-AS1-201ENST00000454205 299 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 RNU6-1153P-201ENST00000516760 105 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 SNORA31.26-201ENST00000517250 137 ntBASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 AL132819.1-201ENST00000555595 208 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 GABRG2-209ENST00000638660 3799 ntTSL 5 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 LEPR-202ENST00000349533 8227 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC3.54□□□□□ -1.84
CCDC144BQ3MJ40 PRKG1-205ENST00000401604 5922 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 Y_RNA.28-201ENST00000362554 111 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 RNU1-72P-201ENST00000362976 153 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC117470.1-201ENST00000381974 330 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 U8.10-201ENST00000384260 133 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 SNORD15B-201ENST00000384714 146 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 RNU6-220P-201ENST00000390919 107 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AL031121.1-201ENST00000406553 254 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 Y_RNA.605-201ENST00000410577 105 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AP000705.1-201ENST00000454567 350 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC007215.1-201ENST00000464893 276 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 TOMM22P6-201ENST00000465035 409 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 SARNP-203ENST00000552080 726 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC020661.2-201ENST00000560114 134 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 MIR3171-201ENST00000584270 74 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 MIR1244-1-201ENST00000612829 85 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 MIR1244-3-201ENST00000635744 85 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 MIR1244-2-201ENST00000636449 85 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 MIR1244-4-202ENST00000636813 85 ntBASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.53□□□□□ -1.84
CCDC144BQ3MJ40 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 Y_RNA.39-201ENST00000362620 98 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 IARS-201ENST00000375627 697 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 SNORA46.1-201ENST00000391069 153 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 RNU2-25P-201ENST00000411041 191 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 CBX3P6-201ENST00000430257 527 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 RPL21P2-201ENST00000440049 481 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 ANXA2P1-201ENST00000505539 926 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AC105758.1-201ENST00000506038 399 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AC026470.2-201ENST00000561492 181 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 MIR4672-201ENST00000583126 81 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AC006023.1-201ENST00000603944 259 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 SNRPGP20-201ENST00000604477 205 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 AC083806.3-201ENST00000614016 455 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 CDKN2B-AS.1-201ENST00000617921 150 ntBASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 QSER1-204ENST00000527788 5052 ntTSL 2 BASIC3.52□□□□□ -1.85
CCDC144BQ3MJ40 MGAT4C-210ENST00000620241 3194 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms