Protein–RNA interactions for Protein: Q12948

FOXC1, Forkhead box protein C1, humanhuman

Predictions only

Length 553 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXC1Q12948 AC140479.6-201ENST00000633535 357 ntBASIC4.29□□□□□ -1.72
FOXC1Q12948 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.29□□□□□ -1.72
FOXC1Q12948 AC007496.3-201ENST00000624987 3443 ntBASIC4.29□□□□□ -1.72
FOXC1Q12948 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
FOXC1Q12948 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXC1Q12948 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXC1Q12948 SNORA63D-201ENST00000364359 132 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 RNU6-24P-201ENST00000384440 107 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXC1Q12948 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.28□□□□□ -1.72
FOXC1Q12948 SNORD65B-201ENST00000459126 73 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 HMGN2P9-201ENST00000476875 229 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 MIR3200-201ENST00000580767 85 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 RN7SL600P-201ENST00000581811 299 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXC1Q12948 AC007229.1-201ENST00000590455 412 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXC1Q12948 AC012442.3-202ENST00000636742 206 ntBASIC4.28□□□□□ -1.72
FOXC1Q12948 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 ARHGAP28-202ENST00000314319 5415 ntAPPRIS P2 TSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 RNU6-1209P-201ENST00000363655 107 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 Y_RNA.265-201ENST00000364677 108 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 SNORA51.4-201ENST00000364993 124 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 Y_RNA.313-201ENST00000365095 103 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 SNORA1.3-201ENST00000384676 136 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXC1Q12948 AC063976.3-201ENST00000426849 329 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 RN7SL197P-201ENST00000466981 299 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 AC110768.1-201ENST00000509222 400 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 RNA5SP20-201ENST00000515976 84 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 RNU6-504P-201ENST00000516568 104 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 AC009320.1-201ENST00000549070 349 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXC1Q12948 MIR5685-201ENST00000579080 79 ntBASIC4.27□□□□□ -1.73
FOXC1Q12948 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 BAZ2B-203ENST00000392782 8058 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 DNAH6-202ENST00000389394 12795 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXC1Q12948 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXC1Q12948 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXC1Q12948 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
FOXC1Q12948 MYO9A-209ENST00000564571 8111 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.26□□□□□ -1.73
FOXC1Q12948 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXC1Q12948 GMNC-201ENST00000442080 3422 ntAPPRIS P1 TSL 5 BASIC4.26□□□□□ -1.73
FOXC1Q12948 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 AL672167.1-204ENST00000641875 3017 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.26□□□□□ -1.73
FOXC1Q12948 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 MOXD1-201ENST00000336749 2950 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 RNU6-1010P-201ENST00000362757 107 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 MIR634-201ENST00000385208 97 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 RPL21P3-201ENST00000395517 478 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 EIF4EP4-201ENST00000424916 578 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 AL353705.1-201ENST00000433468 480 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 RPL23AP52-201ENST00000439311 478 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 AF064858.2-201ENST00000440714 292 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXC1Q12948 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXC1Q12948 RPS3P1-201ENST00000456781 192 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 RNU7-171P-201ENST00000459581 62 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXC1Q12948 RNU6-1018P-201ENST00000516577 106 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 RNY4P20-201ENST00000516678 93 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 DEFB131E-201ENST00000532329 154 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 AC022254.1-201ENST00000567857 235 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 RN7SL435P-201ENST00000584418 282 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 TEX41-300ENST00000631048 69 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXC1Q12948 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXC1Q12948 PCAT14-202ENST00000627127 3935 ntBASIC4.26□□□□□ -1.73
FOXC1Q12948 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
FOXC1Q12948 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXC1Q12948 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
FOXC1Q12948 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 SLC30A6-205ENST00000435660 4776 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 TEX11-201ENST00000344304 2977 ntAPPRIS P3 TSL 5 BASIC4.25□□□□□ -1.73
FOXC1Q12948 AC110597.3-202ENST00000583493 3289 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXC1Q12948 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXC1Q12948 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXC1Q12948 MIR493-201ENST00000385254 89 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 HMGN2P27-201ENST00000427352 270 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC4.25□□□□□ -1.73
FOXC1Q12948 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.25□□□□□ -1.73
FOXC1Q12948 RPL23AP67-201ENST00000465341 474 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 AC004803.1-201ENST00000503602 3207 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 RNU6-240P-201ENST00000516098 97 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
FOXC1Q12948 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.25□□□□□ -1.73
FOXC1Q12948 HSPE1P5-201ENST00000561489 272 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 MIR4458-201ENST00000578872 75 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 MIR5588-201ENST00000581890 63 ntBASIC4.25□□□□□ -1.73
FOXC1Q12948 AC079466.2-201ENST00000585394 185 ntTSL 5 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms