Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC3.23□□□□□ -1.89
MSX2P35548 AL358232.1-201ENST00000448030 501 ntBASIC3.23□□□□□ -1.89
MSX2P35548 snoU13.22-201ENST00000459428 104 ntBASIC3.23□□□□□ -1.89
MSX2P35548 AC117440.1-201ENST00000474107 571 ntBASIC3.23□□□□□ -1.89
MSX2P35548 AP001025.1-201ENST00000486139 332 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RPS29P20-201ENST00000489592 171 ntBASIC3.23□□□□□ -1.89
MSX2P35548 Y_RNA.703-201ENST00000516846 111 ntBASIC3.23□□□□□ -1.89
MSX2P35548 RNU7-110P-201ENST00000516891 62 ntBASIC3.23□□□□□ -1.89
MSX2P35548 SCARNA20.6-201ENST00000517251 106 ntBASIC3.23□□□□□ -1.89
MSX2P35548 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.23□□□□□ -1.89
MSX2P35548 HSPE1P4-201ENST00000550617 308 ntBASIC3.23□□□□□ -1.89
MSX2P35548 AL391261.3-201ENST00000557194 520 ntBASIC3.23□□□□□ -1.89
MSX2P35548 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSX2P35548 AC073308.1-201ENST00000623696 305 ntBASIC3.23□□□□□ -1.89
MSX2P35548 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.23□□□□□ -1.89
MSX2P35548 DST-204ENST00000361203 22431 ntAPPRIS ALT2 TSL 5 BASIC3.23□□□□□ -1.89
MSX2P35548 HAUS6P2-201ENST00000433254 2404 ntBASIC3.23□□□□□ -1.89
MSX2P35548 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC3.23□□□□□ -1.89
MSX2P35548 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.22□□□□□ -1.89
MSX2P35548 DAZ4-201ENST00000382296 2048 ntAPPRIS P5 TSL 5 BASIC3.22□□□□□ -1.89
MSX2P35548 OXR1-207ENST00000497705 2007 ntTSL 2 BASIC3.22□□□□□ -1.89
MSX2P35548 DLEU2_6.3-201ENST00000340052 136 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNA5SP383-201ENST00000362934 120 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNA5SP197-201ENST00000363357 119 ntBASIC3.22□□□□□ -1.89
MSX2P35548 Y_RNA.292-201ENST00000364904 97 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNU6-47P-201ENST00000383866 107 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNU6-20P-201ENST00000384106 107 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNU6-21P-201ENST00000384710 107 ntBASIC3.22□□□□□ -1.89
MSX2P35548 MIR200C-201ENST00000384980 68 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNU6-1140P-201ENST00000410517 106 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AL358075.3-201ENST00000426289 226 ntBASIC3.22□□□□□ -1.89
MSX2P35548 GOT2P5-201ENST00000433995 546 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.22□□□□□ -1.89
MSX2P35548 GPM6BP3-201ENST00000442797 145 ntBASIC3.22□□□□□ -1.89
MSX2P35548 NDUFB4P10-201ENST00000452541 359 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AP000705.1-201ENST00000454567 350 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RPL23AP67-201ENST00000465341 474 ntBASIC3.22□□□□□ -1.89
MSX2P35548 MIR1302-2HG-201ENST00000469289 535 ntTSL 5 BASIC3.22□□□□□ -1.89
MSX2P35548 AC016632.1-201ENST00000503994 196 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AC074198.2-201ENST00000508153 258 ntBASIC3.22□□□□□ -1.89
MSX2P35548 RNU6-861P-201ENST00000516745 106 ntBASIC3.22□□□□□ -1.89
MSX2P35548 CKS1BP7-201ENST00000522230 235 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AC087441.2-201ENST00000529141 262 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC3.22□□□□□ -1.89
MSX2P35548 MIR4444-1-201ENST00000581696 74 ntBASIC3.22□□□□□ -1.89
MSX2P35548 MIR4444-2-201ENST00000584390 74 ntBASIC3.22□□□□□ -1.89
MSX2P35548 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.22□□□□□ -1.89
MSX2P35548 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC3.22□□□□□ -1.89
MSX2P35548 AC100800.1-201ENST00000524252 2054 ntTSL 1 (best) BASIC3.22□□□□□ -1.89
MSX2P35548 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.22□□□□□ -1.89
MSX2P35548 ZFYVE16-202ENST00000505560 6599 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSX2P35548 DOCK7-201ENST00000251157 7084 ntAPPRIS ALT2 TSL 5 BASIC3.21□□□□□ -1.9
MSX2P35548 KNTC1-205ENST00000450485 3655 ntTSL 2 BASIC3.21□□□□□ -1.9
MSX2P35548 RAPGEF6-210ENST00000512052 3535 ntTSL 2 BASIC3.21□□□□□ -1.9
MSX2P35548 TECRL-202ENST00000507440 2876 ntTSL 5 BASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.82-201ENST00000363000 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.92-201ENST00000363043 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.235-201ENST00000364412 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 RNA5SP51-201ENST00000364750 119 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.306-201ENST00000365015 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.312-201ENST00000365089 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.322-201ENST00000365151 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.418-201ENST00000384029 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.506-201ENST00000384494 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 RNU6ATAC15P-201ENST00000408279 121 ntBASIC3.21□□□□□ -1.9
MSX2P35548 RNU6ATAC-201ENST00000408749 126 ntBASIC3.21□□□□□ -1.9
MSX2P35548 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC3.21□□□□□ -1.9
MSX2P35548 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC3.21□□□□□ -1.9
MSX2P35548 HMGN2P10-201ENST00000448085 265 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AL139260.1-202ENST00000456813 441 ntTSL 3 BASIC3.21□□□□□ -1.9
MSX2P35548 snoU13.6-201ENST00000458785 104 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.650-201ENST00000459002 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 SNRPGP7-201ENST00000469016 106 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AC091959.1-201ENST00000495857 238 ntBASIC3.21□□□□□ -1.9
MSX2P35548 SNORA40.9-201ENST00000515895 93 ntBASIC3.21□□□□□ -1.9
MSX2P35548 RNU6-581P-201ENST00000516214 105 ntBASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.777-201ENST00000516982 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC3.21□□□□□ -1.9
MSX2P35548 AC127024.3-201ENST00000582841 460 ntTSL 3 BASIC3.21□□□□□ -1.9
MSX2P35548 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.771-201ENST00000598668 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AC037487.3-201ENST00000606668 112 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AL357075.2-201ENST00000614906 189 ntBASIC3.21□□□□□ -1.9
MSX2P35548 AL590240.4-201ENST00000616908 390 ntBASIC3.21□□□□□ -1.9
MSX2P35548 RDM1-221ENST00000617591 432 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
MSX2P35548 Y_RNA.789-201ENST00000622480 102 ntBASIC3.21□□□□□ -1.9
MSX2P35548 TFEC-203ENST00000393485 2704 ntTSL 2 BASIC3.21□□□□□ -1.9
MSX2P35548 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC3.21□□□□□ -1.9
MSX2P35548 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC3.21□□□□□ -1.9
MSX2P35548 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
MSX2P35548 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.2□□□□□ -1.9
MSX2P35548 UBE2WP1-201ENST00000362030 340 ntBASIC3.2□□□□□ -1.9
MSX2P35548 SNORA25.1-201ENST00000362326 128 ntBASIC3.2□□□□□ -1.9
MSX2P35548 RNU6-858P-201ENST00000362436 107 ntBASIC3.2□□□□□ -1.9
MSX2P35548 Y_RNA.136-201ENST00000363444 102 ntBASIC3.2□□□□□ -1.9
MSX2P35548 Y_RNA.230-201ENST00000364348 109 ntBASIC3.2□□□□□ -1.9
MSX2P35548 RNU6-1175P-201ENST00000365200 107 ntBASIC3.2□□□□□ -1.9
MSX2P35548 RNU6-1280P-201ENST00000365211 107 ntBASIC3.2□□□□□ -1.9
MSX2P35548 SNORA26.3-201ENST00000391119 136 ntBASIC3.2□□□□□ -1.9
MSX2P35548 MTCO2P33-201ENST00000402100 465 ntBASIC3.2□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 114.8 ms