Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 RNA5SP201-201ENST00000410316 124 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AL030996.1-201ENST00000411430 235 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC1.77□□□□□ -2.13
SDC1P18827 AL139413.1-201ENST00000421309 217 ntBASIC1.77□□□□□ -2.13
SDC1P18827 HMGN2P19-201ENST00000425149 265 ntBASIC1.77□□□□□ -2.13
SDC1P18827 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC1P18827 MTND3P9-201ENST00000429526 346 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.77□□□□□ -2.13
SDC1P18827 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.77□□□□□ -2.13
SDC1P18827 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.77□□□□□ -2.13
SDC1P18827 ANXA2P1-201ENST00000505539 926 ntBASIC1.77□□□□□ -2.13
SDC1P18827 MIR449C-201ENST00000516047 92 ntBASIC1.77□□□□□ -2.13
SDC1P18827 RNU2-19P-201ENST00000517288 84 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC007375.1-201ENST00000554513 578 ntBASIC1.77□□□□□ -2.13
SDC1P18827 SCOCP1-201ENST00000554676 349 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC1.77□□□□□ -2.13
SDC1P18827 ZNF519P2-201ENST00000557032 169 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC078899.2-201ENST00000595282 212 ntBASIC1.77□□□□□ -2.13
SDC1P18827 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.77□□□□□ -2.13
SDC1P18827 Z98751.3-201ENST00000604447 521 ntBASIC1.77□□□□□ -2.13
SDC1P18827 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.77□□□□□ -2.13
SDC1P18827 AL162373.1-201ENST00000620433 407 ntBASIC1.77□□□□□ -2.13
SDC1P18827 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC068137.4-201ENST00000638485 296 ntBASIC1.77□□□□□ -2.13
SDC1P18827 AC009541.1-201ENST00000438279 2662 ntBASIC1.76□□□□□ -2.13
SDC1P18827 RNU6-227P-201ENST00000362865 103 ntBASIC1.76□□□□□ -2.13
SDC1P18827 RNU6-1252P-201ENST00000363054 104 ntBASIC1.76□□□□□ -2.13
SDC1P18827 SNORD115-3-201ENST00000363100 82 ntBASIC1.76□□□□□ -2.13
SDC1P18827 RNU6-214P-201ENST00000384130 107 ntBASIC1.76□□□□□ -2.13
SDC1P18827 MIR518A2-201ENST00000384966 87 ntBASIC1.76□□□□□ -2.13
SDC1P18827 RNU6-332P-201ENST00000391193 108 ntBASIC1.76□□□□□ -2.13
SDC1P18827 SNRPEP10-201ENST00000420249 274 ntBASIC1.76□□□□□ -2.13
SDC1P18827 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC1P18827 NDUFA5P4-201ENST00000436704 385 ntBASIC1.76□□□□□ -2.13
SDC1P18827 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.76□□□□□ -2.13
SDC1P18827 RNA5SP233-201ENST00000459153 113 ntBASIC1.76□□□□□ -2.13
SDC1P18827 RPL9P9-202ENST00000466501 579 ntBASIC1.76□□□□□ -2.13
SDC1P18827 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC1P18827 AC100830.2-201ENST00000581636 240 ntBASIC1.76□□□□□ -2.13
SDC1P18827 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.76□□□□□ -2.13
SDC1P18827 U4.5-201ENST00000617137 123 ntBASIC1.76□□□□□ -2.13
SDC1P18827 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.76□□□□□ -2.13
SDC1P18827 AC139792.2-201ENST00000624218 587 ntBASIC1.76□□□□□ -2.13
SDC1P18827 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC1.76□□□□□ -2.13
SDC1P18827 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.76□□□□□ -2.13
SDC1P18827 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC1.76□□□□□ -2.13
SDC1P18827 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC1.75□□□□□ -2.13
SDC1P18827 Y_RNA.89-201ENST00000363031 102 ntBASIC1.75□□□□□ -2.13
SDC1P18827 BTF3L4P2-201ENST00000392798 346 ntBASIC1.75□□□□□ -2.13
SDC1P18827 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.75□□□□□ -2.13
SDC1P18827 MIR1294-201ENST00000408503 142 ntBASIC1.75□□□□□ -2.13
SDC1P18827 MIR548F1-201ENST00000408667 84 ntBASIC1.75□□□□□ -2.13
SDC1P18827 RNU6-325P-201ENST00000411132 105 ntBASIC1.75□□□□□ -2.13
SDC1P18827 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.75□□□□□ -2.13
SDC1P18827 UBE2V1P4-201ENST00000425374 344 ntBASIC1.75□□□□□ -2.13
SDC1P18827 USP9YP28-201ENST00000435142 589 ntBASIC1.75□□□□□ -2.13
SDC1P18827 TRBV25OR9-2-201ENST00000438417 374 ntBASIC1.75□□□□□ -2.13
SDC1P18827 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.75□□□□□ -2.13
SDC1P18827 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.75□□□□□ -2.13
SDC1P18827 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.75□□□□□ -2.13
SDC1P18827 AC019155.3-201ENST00000454957 600 ntTSL 2 BASIC1.75□□□□□ -2.13
SDC1P18827 PTP4A1P4-201ENST00000512479 322 ntBASIC1.75□□□□□ -2.13
SDC1P18827 RNU6-991P-201ENST00000516168 107 ntBASIC1.75□□□□□ -2.13
SDC1P18827 HSPE1P18-201ENST00000517602 280 ntBASIC1.75□□□□□ -2.13
SDC1P18827 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.75□□□□□ -2.13
SDC1P18827 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC1.75□□□□□ -2.13
SDC1P18827 AC021231.3-201ENST00000558497 370 ntBASIC1.75□□□□□ -2.13
SDC1P18827 MIR4529-201ENST00000578110 78 ntBASIC1.75□□□□□ -2.13
SDC1P18827 MIR3923-201ENST00000579521 83 ntBASIC1.75□□□□□ -2.13
SDC1P18827 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.75□□□□□ -2.13
SDC1P18827 AC012493.3-201ENST00000604494 112 ntBASIC1.75□□□□□ -2.13
SDC1P18827 AC090517.2-201ENST00000614966 680 ntBASIC1.75□□□□□ -2.13
SDC1P18827 AL359314.1-201ENST00000616913 261 ntBASIC1.75□□□□□ -2.13
SDC1P18827 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.75□□□□□ -2.13
SDC1P18827 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.75□□□□□ -2.13
SDC1P18827 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.74□□□□□ -2.13
SDC1P18827 RNU4-56P-201ENST00000364700 142 ntBASIC1.74□□□□□ -2.13
SDC1P18827 RNU6-534P-201ENST00000364877 106 ntBASIC1.74□□□□□ -2.13
SDC1P18827 SNORD14D-201ENST00000384390 87 ntBASIC1.74□□□□□ -2.13
SDC1P18827 SNORD115-47-201ENST00000391226 86 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AL079342.1-201ENST00000401460 267 ntBASIC1.74□□□□□ -2.13
SDC1P18827 RN7SKP192-201ENST00000411291 327 ntBASIC1.74□□□□□ -2.13
SDC1P18827 MTCO3P18-201ENST00000440206 761 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC003989.2-201ENST00000440224 169 ntBASIC1.74□□□□□ -2.13
SDC1P18827 U8.21-201ENST00000459536 136 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC104564.1-201ENST00000493028 407 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.74□□□□□ -2.13
SDC1P18827 MTCYBP18-201ENST00000501056 747 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC021146.2-201ENST00000504736 556 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC1P18827 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC1P18827 AC093259.1-201ENST00000509755 300 ntBASIC1.74□□□□□ -2.13
SDC1P18827 FAM206BP-201ENST00000510179 541 ntBASIC1.74□□□□□ -2.13
SDC1P18827 MTND1P5-201ENST00000517906 940 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.74□□□□□ -2.13
SDC1P18827 CPDP1-201ENST00000579660 283 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC007229.1-201ENST00000590455 412 ntBASIC1.74□□□□□ -2.13
SDC1P18827 AC008749.1-201ENST00000597650 306 ntBASIC1.74□□□□□ -2.13
SDC1P18827 PCGEM1.1-201ENST00000613431 131 ntBASIC1.74□□□□□ -2.13
SDC1P18827 SDR42E1P4-201ENST00000620894 481 ntBASIC1.74□□□□□ -2.13
Retrieved 100 of 98,524 protein–RNA pairs in 127.9 ms