Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AC008549.1-201ENST00000512900 643 ntBASIC2.56□□□□□ -2
HOXC11O43248 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.56□□□□□ -2
HOXC11O43248 AC034114.1-201ENST00000520293 285 ntBASIC2.56□□□□□ -2
HOXC11O43248 AC109446.1-201ENST00000566172 220 ntBASIC2.56□□□□□ -2
HOXC11O43248 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.56□□□□□ -2
HOXC11O43248 AC009127.3-201ENST00000570531 403 ntBASIC2.56□□□□□ -2
HOXC11O43248 SNORD14A-201ENST00000606526 91 ntBASIC2.56□□□□□ -2
HOXC11O43248 AC064859.1-201ENST00000624741 174 ntBASIC2.56□□□□□ -2
HOXC11O43248 AL450472.1-202ENST00000637286 180 ntBASIC2.56□□□□□ -2
HOXC11O43248 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC2.56□□□□□ -2
HOXC11O43248 AC233981.2-201ENST00000611524 1614 ntBASIC2.56□□□□□ -2
HOXC11O43248 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC2.55□□□□□ -2
HOXC11O43248 RNA5SP289-201ENST00000362332 137 ntBASIC2.55□□□□□ -2
HOXC11O43248 DEFA7P-201ENST00000382676 285 ntBASIC2.55□□□□□ -2
HOXC11O43248 RNU6-611P-201ENST00000384276 104 ntBASIC2.55□□□□□ -2
HOXC11O43248 RNU6-784P-201ENST00000384330 106 ntBASIC2.55□□□□□ -2
HOXC11O43248 MIR592-201ENST00000384959 97 ntBASIC2.55□□□□□ -2
HOXC11O43248 SNORA12-201ENST00000391162 147 ntBASIC2.55□□□□□ -2
HOXC11O43248 RNA5SP270-201ENST00000411361 118 ntBASIC2.55□□□□□ -2
HOXC11O43248 CR769767.1-201ENST00000436337 346 ntBASIC2.55□□□□□ -2
HOXC11O43248 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.55□□□□□ -2
HOXC11O43248 AC018868.1-201ENST00000491307 315 ntBASIC2.55□□□□□ -2
HOXC11O43248 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.55□□□□□ -2
HOXC11O43248 NDUFA5P6-201ENST00000542110 379 ntBASIC2.55□□□□□ -2
HOXC11O43248 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.55□□□□□ -2
HOXC11O43248 MIR5092-201ENST00000583139 88 ntBASIC2.55□□□□□ -2
HOXC11O43248 RBM11P1-201ENST00000604951 799 ntBASIC2.55□□□□□ -2
HOXC11O43248 AP000654.2-201ENST00000605633 586 ntBASIC2.55□□□□□ -2
HOXC11O43248 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.55□□□□□ -2
HOXC11O43248 PCGEM1.1-201ENST00000613431 131 ntBASIC2.55□□□□□ -2
HOXC11O43248 MIR6128-201ENST00000615528 109 ntBASIC2.55□□□□□ -2
HOXC11O43248 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.55□□□□□ -2
HOXC11O43248 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC2.54□□□□□ -2
HOXC11O43248 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.54□□□□□ -2
HOXC11O43248 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXC11O43248 RNU6-1159P-201ENST00000362933 107 ntBASIC2.54□□□□□ -2
HOXC11O43248 RNA5SP456-201ENST00000364002 114 ntBASIC2.54□□□□□ -2
HOXC11O43248 SNORA29-201ENST00000384183 140 ntBASIC2.54□□□□□ -2
HOXC11O43248 SNORA70B-201ENST00000384210 135 ntBASIC2.54□□□□□ -2
HOXC11O43248 RNU6-306P-201ENST00000384617 107 ntBASIC2.54□□□□□ -2
HOXC11O43248 SNORA3.2-201ENST00000408221 125 ntBASIC2.54□□□□□ -2
HOXC11O43248 RN7SKP32-201ENST00000410167 303 ntBASIC2.54□□□□□ -2
HOXC11O43248 RPL21P111-201ENST00000418453 477 ntBASIC2.54□□□□□ -2
HOXC11O43248 MTND1P17-201ENST00000448961 204 ntBASIC2.54□□□□□ -2
HOXC11O43248 AL513124.1-201ENST00000450410 614 ntBASIC2.54□□□□□ -2
HOXC11O43248 RPS27P27-201ENST00000498779 255 ntBASIC2.54□□□□□ -2
HOXC11O43248 RNU1-41P-201ENST00000516161 162 ntBASIC2.54□□□□□ -2
HOXC11O43248 RNU1-48P-201ENST00000516400 162 ntBASIC2.54□□□□□ -2
HOXC11O43248 AC104211.3-201ENST00000518861 270 ntTSL 3 BASIC2.54□□□□□ -2
HOXC11O43248 EIF4A1P12-201ENST00000551910 141 ntBASIC2.54□□□□□ -2
HOXC11O43248 MYL12BP1-201ENST00000569826 507 ntBASIC2.54□□□□□ -2
HOXC11O43248 SNRPGP17-201ENST00000603780 214 ntBASIC2.54□□□□□ -2
HOXC11O43248 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXC11O43248 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.54□□□□□ -2
HOXC11O43248 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC2.54□□□□□ -2
HOXC11O43248 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
HOXC11O43248 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.53□□□□□ -2
HOXC11O43248 AC016717.2-201ENST00000609089 5141 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNU6-743P-201ENST00000364151 106 ntBASIC2.53□□□□□ -2
HOXC11O43248 SNORD32B-201ENST00000364460 84 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNA5SP210-201ENST00000391034 120 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNU6-1093P-201ENST00000391194 107 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNA5SP181-201ENST00000410246 98 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNA5SP201-201ENST00000410316 124 ntBASIC2.53□□□□□ -2
HOXC11O43248 RNU4-53P-201ENST00000410828 140 ntBASIC2.53□□□□□ -2
HOXC11O43248 EDDM3CP-201ENST00000415977 425 ntBASIC2.53□□□□□ -2
HOXC11O43248 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.53□□□□□ -2
HOXC11O43248 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC2.53□□□□□ -2
HOXC11O43248 RN7SL636P-201ENST00000497504 294 ntBASIC2.53□□□□□ -2
HOXC11O43248 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.53□□□□□ -2
HOXC11O43248 AC234781.5-201ENST00000508429 271 ntBASIC2.53□□□□□ -2
HOXC11O43248 MRPS36P4-201ENST00000534436 298 ntBASIC2.53□□□□□ -2
HOXC11O43248 MIR4273-201ENST00000582824 84 ntBASIC2.53□□□□□ -2
HOXC11O43248 AC137590.2-201ENST00000619709 240 ntBASIC2.53□□□□□ -2
HOXC11O43248 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.53□□□□□ -2
HOXC11O43248 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.53□□□□□ -2
HOXC11O43248 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.53□□□□□ -2.01
HOXC11O43248 CHD9-202ENST00000398510 11337 ntTSL 1 (best) BASIC2.52□□□□□ -2.01
HOXC11O43248 ZNF658B-202ENST00000615961 3375 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 MIR6073-201ENST00000352083 89 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
HOXC11O43248 RNU6-26P-201ENST00000383985 107 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 SNORA6-201ENST00000384033 151 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 RNU6-378P-201ENST00000384324 107 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AC074085.1-201ENST00000413598 418 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 RBMX2P4-201ENST00000441256 376 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 IFNA11P-201ENST00000446352 526 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AC245102.2-201ENST00000448956 180 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AC107399.1-201ENST00000451226 265 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AL137159.1-201ENST00000452808 512 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 SNORA31.11-201ENST00000516528 139 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 RNU7-30P-201ENST00000516835 62 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 RNA5SP402-201ENST00000517148 110 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 RPS3AP23-202ENST00000574601 686 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AC103810.6-201ENST00000606708 136 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 AC005520.5-201ENST00000613926 164 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.52□□□□□ -2.01
HOXC11O43248 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.51□□□□□ -2.01
HOXC11O43248 RNU6-845P-201ENST00000362578 103 ntBASIC2.51□□□□□ -2.01
HOXC11O43248 SNORA3A-201ENST00000364113 130 ntBASIC2.51□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms