Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 SNORA31.17-201ENST00000516953 127 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 AC087441.2-201ENST00000529141 262 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC1.67□□□□□ -2.14
CLDN3O15551 AL442163.1-201ENST00000557251 515 ntTSL 5 BASIC1.67□□□□□ -2.14
CLDN3O15551 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.67□□□□□ -2.14
CLDN3O15551 MIR4528-201ENST00000577763 90 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 MIR3198-2-201ENST00000577868 80 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 MIR4285-201ENST00000581001 85 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 AC010900.2-201ENST00000604508 210 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 AP001836.1-201ENST00000604675 523 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 PCGEM1.1-201ENST00000613431 131 ntBASIC1.67□□□□□ -2.14
CLDN3O15551 MIR424-201ENST00000362227 98 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 MIR126-201ENST00000362291 85 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 Y_RNA.140-201ENST00000363474 103 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 Y_RNA.159-201ENST00000363674 87 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU1-42P-201ENST00000364033 160 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU6-996P-201ENST00000365438 107 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU6-439P-201ENST00000384188 106 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU6-378P-201ENST00000384324 107 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU6-348P-201ENST00000384386 107 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AC068050.1-201ENST00000394891 380 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 MIR1323-201ENST00000408090 73 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.66□□□□□ -2.14
CLDN3O15551 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC1.66□□□□□ -2.14
CLDN3O15551 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC1.66□□□□□ -2.14
CLDN3O15551 AC108667.1-201ENST00000428618 249 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AC002486.1-201ENST00000435098 391 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 HMGB1P18-201ENST00000438801 619 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 RNU7-14P-201ENST00000459331 62 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 ARL2BPP4-201ENST00000506854 471 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC1.66□□□□□ -2.14
CLDN3O15551 RNU6-567P-201ENST00000516746 107 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.66□□□□□ -2.14
CLDN3O15551 AC004223.2-201ENST00000590309 544 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 Z98751.3-201ENST00000604447 521 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AL645939.4-201ENST00000604495 135 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AC121247.2-201ENST00000604776 136 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 AP001596.2-201ENST00000608410 312 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 uc_338.5-201ENST00000611839 155 ntBASIC1.66□□□□□ -2.14
CLDN3O15551 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
CLDN3O15551 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
CLDN3O15551 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.14
CLDN3O15551 KIAA1107-201ENST00000370378 4622 ntTSL 5 BASIC1.65□□□□□ -2.15
CLDN3O15551 SNORA32.2-201ENST00000384049 122 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 SNORA36A-201ENST00000384221 132 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 SNORA26.3-201ENST00000391119 136 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 MIR208B-201ENST00000401172 77 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC1.65□□□□□ -2.15
CLDN3O15551 RPS20P15-201ENST00000412792 311 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC1.65□□□□□ -2.15
CLDN3O15551 AC073464.1-201ENST00000429823 534 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 VN1R108P-201ENST00000431580 830 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC1.65□□□□□ -2.15
CLDN3O15551 AC010409.1-201ENST00000487382 476 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.65□□□□□ -2.15
CLDN3O15551 AC097473.1-201ENST00000508142 408 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 FAM206BP-201ENST00000510179 541 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.65□□□□□ -2.15
CLDN3O15551 EIF4A1P12-201ENST00000551910 141 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AC021231.3-201ENST00000558497 370 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 CYP4A27P-201ENST00000567218 190 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 MIR5094-201ENST00000578766 85 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AC005154.1-222ENST00000579024 341 ntTSL 5 BASIC1.65□□□□□ -2.15
CLDN3O15551 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.65□□□□□ -2.15
CLDN3O15551 AP000942.3-201ENST00000603702 160 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AC016925.2-201ENST00000605108 242 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AL158063.1-201ENST00000615349 536 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 uc_338.34-201ENST00000617467 174 ntBASIC1.65□□□□□ -2.15
CLDN3O15551 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.65□□□□□ -2.15
CLDN3O15551 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.65□□□□□ -2.15
CLDN3O15551 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.64□□□□□ -2.15
CLDN3O15551 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.64□□□□□ -2.15
CLDN3O15551 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
CLDN3O15551 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.64□□□□□ -2.15
CLDN3O15551 RNU6-661P-201ENST00000362409 107 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 RNU6-1026P-201ENST00000384465 108 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 MIR1304-201ENST00000408243 91 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC002456.1-203ENST00000412669 449 ntTSL 3 BASIC1.64□□□□□ -2.15
CLDN3O15551 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC1.64□□□□□ -2.15
CLDN3O15551 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.64□□□□□ -2.15
CLDN3O15551 RNU6-956P-201ENST00000458868 103 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC008628.2-201ENST00000502605 298 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 SNORA31.24-201ENST00000517232 57 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 SUMO2P18-201ENST00000518873 252 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 MTND4P7-201ENST00000523876 130 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.64□□□□□ -2.15
CLDN3O15551 AC015720.1-201ENST00000565251 277 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC090517.1-201ENST00000569307 266 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC008088.1-201ENST00000580993 280 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.64□□□□□ -2.15
CLDN3O15551 AC073648.5-201ENST00000603502 305 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AC087752.4-201ENST00000605911 462 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 AL354950.2-201ENST00000617939 290 ntBASIC1.64□□□□□ -2.15
CLDN3O15551 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.64□□□□□ -2.15
CLDN3O15551 RNU5A-6P-201ENST00000384136 116 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.63□□□□□ -2.15
CLDN3O15551 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.63□□□□□ -2.15
CLDN3O15551 AL606923.1-201ENST00000406616 190 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 RNU4-62P-201ENST00000410125 130 ntBASIC1.63□□□□□ -2.15
CLDN3O15551 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC1.63□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 92.4 ms