Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 MTCO1P21-201ENST00000416634 589 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.65□□□□□ -1.99
NPHP1O15259 UBE2V1P4-201ENST00000425374 344 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AL445646.1-201ENST00000431784 216 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 NDUFA5P4-201ENST00000436704 385 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 TRBV25OR9-2-201ENST00000438417 374 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC2.65□□□□□ -1.99
NPHP1O15259 AMD1P1-201ENST00000457220 922 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 RPL9P9-202ENST00000466501 579 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC2.65□□□□□ -1.99
NPHP1O15259 RNU6-1332P-201ENST00000516666 104 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.65□□□□□ -1.99
NPHP1O15259 AC021231.3-201ENST00000558497 370 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 MIR3923-201ENST00000579521 83 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 Z98751.3-201ENST00000604447 521 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AL359314.1-201ENST00000616913 261 ntBASIC2.65□□□□□ -1.99
NPHP1O15259 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC2.65□□□□□ -1.99
NPHP1O15259 C6orf10-201ENST00000375007 2125 ntAPPRIS ALT2 TSL 5 BASIC2.65□□□□□ -1.99
NPHP1O15259 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.64□□□□□ -1.99
NPHP1O15259 RNU6-254P-201ENST00000363377 107 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 RNU6-1317P-201ENST00000364582 104 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 U8.13-201ENST00000390842 128 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 SNORA40.19-201ENST00000390846 128 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 SNORA26.9-201ENST00000391322 122 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 MIR1294-201ENST00000408503 142 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 U8.21-201ENST00000459536 136 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 AC104564.1-201ENST00000493028 407 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC2.64□□□□□ -1.99
NPHP1O15259 PTP4A1P4-201ENST00000512479 322 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 IGLV3-17-201ENST00000519099 244 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 MTND1P35-201ENST00000526739 508 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 AC007229.1-201ENST00000590455 412 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 CTHRC1P1-201ENST00000605383 469 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 AC016727.1-205ENST00000605437 569 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 RMST_3.1-201ENST00000611651 109 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC2.64□□□□□ -1.99
NPHP1O15259 U4.5-201ENST00000617137 123 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 MIR203B-201ENST00000636080 86 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 AC009541.1-201ENST00000438279 2662 ntBASIC2.64□□□□□ -1.99
NPHP1O15259 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NPHP1O15259 Y_RNA.373-201ENST00000365600 103 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 RNU6-1215P-201ENST00000384441 102 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 SNRPEP10-201ENST00000420249 274 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.63□□□□□ -1.99
NPHP1O15259 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.63□□□□□ -1.99
NPHP1O15259 AC087241.2-201ENST00000535801 324 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.63□□□□□ -1.99
NPHP1O15259 PCGEM1.1-201ENST00000613431 131 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 Y_RNA.783-201ENST00000613546 102 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 AL160394.1-201ENST00000624765 724 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 AC024614.3-201ENST00000637860 256 ntBASIC2.63□□□□□ -1.99
NPHP1O15259 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
NPHP1O15259 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
NPHP1O15259 Y_RNA.164-201ENST00000363709 102 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 Y_RNA.450-201ENST00000384198 113 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 SNORD14D-201ENST00000384390 87 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 MIR29C-201ENST00000385231 88 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 SNORA48.3-201ENST00000391081 134 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
NPHP1O15259 RNA5SP450-201ENST00000411206 102 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.62□□□□□ -1.99
NPHP1O15259 AL445685.2-201ENST00000422551 342 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC2.62□□□□□ -1.99
NPHP1O15259 MTND3P9-201ENST00000429526 346 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.62□□□□□ -1.99
NPHP1O15259 RNU7-66P-201ENST00000459469 62 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 AC093259.1-201ENST00000509755 300 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 MIR449C-201ENST00000516047 92 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 MTND1P5-201ENST00000517906 940 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.62□□□□□ -1.99
NPHP1O15259 CYP4A27P-201ENST00000567218 190 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 AC078899.2-201ENST00000595282 212 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 AP000654.2-201ENST00000605633 586 ntBASIC2.62□□□□□ -1.99
NPHP1O15259 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
NPHP1O15259 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC2.62□□□□□ -1.99
NPHP1O15259 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.62□□□□□ -1.99
NPHP1O15259 SNORD115-3-201ENST00000363100 82 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 SNORD113-7-201ENST00000363762 77 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 Y_RNA.238-201ENST00000364441 102 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 SNORA6-201ENST00000384033 151 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 RNU6-332P-201ENST00000391193 108 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.61□□□□□ -1.99
NPHP1O15259 WARS2P1-201ENST00000429678 537 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 AC007677.1-201ENST00000445757 515 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC2.61□□□□□ -1.99
NPHP1O15259 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.61□□□□□ -1.99
NPHP1O15259 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 RNU6-567P-201ENST00000516746 107 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 AC121758.2-201ENST00000553271 193 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 MIR6845-201ENST00000613182 61 ntBASIC2.61□□□□□ -1.99
NPHP1O15259 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.61□□□□□ -1.99
NPHP1O15259 AC092881.1-201ENST00000638218 2733 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 RNU1-17P-201ENST00000363022 152 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 RNU6-378P-201ENST00000384324 107 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 SNORA40.18-201ENST00000391200 128 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 RNU6-325P-201ENST00000411132 105 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AL030996.1-201ENST00000411430 235 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.6□□□□□ -1.99
NPHP1O15259 IPO7P1-201ENST00000442031 636 ntBASIC2.6□□□□□ -1.99
NPHP1O15259 AC245102.2-201ENST00000448956 180 ntBASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 151.4 ms