Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 SUPT16HP1-201ENST00000537175 3133 ntBASIC3.98□□□□□ -1.77
SOX1O00570 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 SYTL2-203ENST00000359152 4123 ntAPPRIS ALT1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 SCEL-202ENST00000377246 3081 ntAPPRIS ALT2 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX1O00570 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 SNORA31-201ENST00000362607 130 ntBASIC3.98□□□□□ -1.77
SOX1O00570 SNORA18.3-201ENST00000384122 132 ntBASIC3.98□□□□□ -1.77
SOX1O00570 MIR199A2-201ENST00000385289 110 ntBASIC3.98□□□□□ -1.77
SOX1O00570 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
SOX1O00570 RNU6-1168P-201ENST00000390831 104 ntBASIC3.98□□□□□ -1.77
SOX1O00570 Y_RNA.586-201ENST00000391146 98 ntBASIC3.98□□□□□ -1.77
SOX1O00570 AC099548.1-201ENST00000421443 426 ntBASIC3.98□□□□□ -1.77
SOX1O00570 SEPT7P4-201ENST00000437076 306 ntBASIC3.98□□□□□ -1.77
SOX1O00570 AC083863.1-201ENST00000438811 231 ntBASIC3.98□□□□□ -1.77
SOX1O00570 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC3.98□□□□□ -1.77
SOX1O00570 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.98□□□□□ -1.77
SOX1O00570 Y_RNA.637-201ENST00000459424 114 ntBASIC3.98□□□□□ -1.77
SOX1O00570 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 RNU6-928P-201ENST00000516876 104 ntBASIC3.98□□□□□ -1.77
SOX1O00570 AC011602.1-201ENST00000546484 331 ntBASIC3.98□□□□□ -1.77
SOX1O00570 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.98□□□□□ -1.77
SOX1O00570 AC005520.5-201ENST00000613926 164 ntBASIC3.98□□□□□ -1.77
SOX1O00570 CUL4B-202ENST00000371322 4902 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 BLM-208ENST00000560509 3966 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 TARID-205ENST00000607033 2960 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 WAC-221ENST00000628285 2740 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
SOX1O00570 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.97□□□□□ -1.77
SOX1O00570 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 MECOM-219ENST00000628990 4835 ntAPPRIS P3 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC3.97□□□□□ -1.77
SOX1O00570 LINC00971-202ENST00000484892 7308 ntTSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 Y_RNA.329-201ENST00000365209 107 ntBASIC3.97□□□□□ -1.77
SOX1O00570 MIR186-201ENST00000384988 86 ntBASIC3.97□□□□□ -1.77
SOX1O00570 EI24P2-201ENST00000397776 1076 ntBASIC3.97□□□□□ -1.77
SOX1O00570 AC096649.2-201ENST00000416186 393 ntBASIC3.97□□□□□ -1.77
SOX1O00570 DBIP2-201ENST00000419076 262 ntBASIC3.97□□□□□ -1.77
SOX1O00570 AL121890.1-201ENST00000435457 205 ntBASIC3.97□□□□□ -1.77
SOX1O00570 RPS20P10-201ENST00000451209 253 ntBASIC3.97□□□□□ -1.77
SOX1O00570 AIG1P1-201ENST00000503376 148 ntBASIC3.97□□□□□ -1.77
SOX1O00570 SAR1B-211ENST00000509937 455 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX1O00570 RNA5SP164-201ENST00000516533 110 ntBASIC3.97□□□□□ -1.77
SOX1O00570 AC006199.1-201ENST00000548728 219 ntBASIC3.97□□□□□ -1.77
SOX1O00570 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 MIR5004-201ENST00000579078 107 ntBASIC3.97□□□□□ -1.77
SOX1O00570 MIR3690-201ENST00000580266 75 ntBASIC3.97□□□□□ -1.77
SOX1O00570 CT45A5-202ENST00000617203 726 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 CCNYL2-203ENST00000638057 730 ntTSL 3 BASIC3.97□□□□□ -1.77
SOX1O00570 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 CCDC110-202ENST00000393540 2722 ntAPPRIS ALT2 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 SMC6-203ENST00000402989 3729 ntAPPRIS P1 TSL 2 BASIC3.97□□□□□ -1.77
SOX1O00570 AGTPBP1-205ENST00000376083 4208 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.97□□□□□ -1.77
SOX1O00570 BRCA2-201ENST00000380152 11986 ntAPPRIS P1 TSL 5 BASIC3.97□□□□□ -1.77
SOX1O00570 MAP3K7-202ENST00000369325 4633 ntTSL 1 (best) BASIC3.96□□□□□ -1.77
SOX1O00570 PCDH15-218ENST00000437009 6804 ntTSL 5 BASIC3.96□□□□□ -1.77
SOX1O00570 MME-211ENST00000492661 2854 ntAPPRIS P1 TSL 2 BASIC3.96□□□□□ -1.78
SOX1O00570 SNORA22C-201ENST00000384614 134 ntBASIC3.96□□□□□ -1.78
SOX1O00570 MIR549A-201ENST00000385268 96 ntBASIC3.96□□□□□ -1.78
SOX1O00570 MIR208B-201ENST00000401172 77 ntBASIC3.96□□□□□ -1.78
SOX1O00570 RNU6ATAC19P-201ENST00000408096 110 ntBASIC3.96□□□□□ -1.78
SOX1O00570 CYCSP48-201ENST00000417124 323 ntBASIC3.96□□□□□ -1.78
SOX1O00570 AC245052.1-201ENST00000426213 410 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX1O00570 AC006517.1-201ENST00000480485 328 ntBASIC3.96□□□□□ -1.78
SOX1O00570 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX1O00570 IGLV3-26-201ENST00000520756 302 ntBASIC3.96□□□□□ -1.78
SOX1O00570 AP002001.1-203ENST00000534002 267 ntBASIC3.96□□□□□ -1.78
SOX1O00570 MIR3923-201ENST00000579521 83 ntBASIC3.96□□□□□ -1.78
SOX1O00570 AC007952.9-201ENST00000584365 191 ntTSL 3 BASIC3.96□□□□□ -1.78
SOX1O00570 Y_RNA.778-201ENST00000620203 90 ntBASIC3.96□□□□□ -1.78
SOX1O00570 MIR3199-2-201ENST00000636243 86 ntBASIC3.96□□□□□ -1.78
SOX1O00570 SNORD98-201ENST00000636377 67 ntBASIC3.96□□□□□ -1.78
SOX1O00570 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.96□□□□□ -1.78
SOX1O00570 AC019117.3-201ENST00000637807 3523 ntAPPRIS P1 TSL 5 BASIC3.96□□□□□ -1.78
SOX1O00570 CEP295-201ENST00000325212 8057 ntAPPRIS P2 TSL 2 BASIC3.96□□□□□ -1.78
SOX1O00570 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC3.96□□□□□ -1.78
SOX1O00570 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC3.95□□□□□ -1.78
SOX1O00570 TAX1BP1-213ENST00000543117 3365 ntAPPRIS ALT2 TSL 2 BASIC3.95□□□□□ -1.78
SOX1O00570 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.95□□□□□ -1.78
SOX1O00570 RNU6-727P-201ENST00000363592 107 ntBASIC3.95□□□□□ -1.78
SOX1O00570 RNU6-270P-201ENST00000364131 105 ntBASIC3.95□□□□□ -1.78
SOX1O00570 RNA5SP167-201ENST00000365461 116 ntBASIC3.95□□□□□ -1.78
SOX1O00570 SNORA44-201ENST00000384584 132 ntBASIC3.95□□□□□ -1.78
SOX1O00570 SNORD17-201ENST00000390930 237 ntBASIC3.95□□□□□ -1.78
SOX1O00570 Z75741.1-201ENST00000446793 314 ntBASIC3.95□□□□□ -1.78
SOX1O00570 AC010409.1-201ENST00000487382 476 ntBASIC3.95□□□□□ -1.78
SOX1O00570 LINC02230-201ENST00000511174 301 ntTSL 5 BASIC3.95□□□□□ -1.78
SOX1O00570 RNU6-436P-201ENST00000516171 114 ntBASIC3.95□□□□□ -1.78
SOX1O00570 SNORD116-25-201ENST00000516517 92 ntBASIC3.95□□□□□ -1.78
SOX1O00570 AC100770.1-201ENST00000532310 322 ntBASIC3.95□□□□□ -1.78
SOX1O00570 TGIF1P1-201ENST00000558095 802 ntBASIC3.95□□□□□ -1.78
SOX1O00570 AL162713.1-201ENST00000604480 262 ntBASIC3.95□□□□□ -1.78
SOX1O00570 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC3.95□□□□□ -1.78
Retrieved 100 of 98,524 protein–RNA pairs in 112.1 ms